Nipponia nippon (crested ibis): 104020406
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Entry
104020406 CDS
T05756
Symbol
ERCC3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03022
Basal transcription factors
nni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104020406 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
104020406 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nni03021
]
104020406 (ERCC3)
03400 DNA repair and recombination proteins [BR:
nni03400
]
104020406 (ERCC3)
Enzymes [BR:
nni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104020406 (ERCC3)
Transcription machinery [BR:
nni03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104020406 (ERCC3)
DNA repair and recombination proteins [BR:
nni03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104020406 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
104020406
NCBI-ProteinID:
XP_009472116
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MKLSSQKIRIEVPTAALLPDKKKSKKRHYDDDEDDEDEAPGKESQEAVPSAAGKQVEDSG
TKVDEYGAKDYRQQMPLKADHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRP
THIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVSYGKVKLVL
KHNRYFVESTHPDVIQQLLQDHVIRDCRLRNAEGEETELITETFTSKSAISKSSEGGFGP
STSQGTDAQNKPDVPADLFEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYP
LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG
VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTY
SMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATL
VREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKR
ILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERM
QILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGM
VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSSKEEQQ
QLLQKVLQASDLDAEEEVVAGEYGSKSAQVSRRTGTMSSMSGADDTVYMEYHSSRSKASS
NKHIHPLFKRFRK
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaagctctcaaaaaataaggatcgaggttcccactgcggctctgctcccagat
aagaagaagtccaagaagcgccattacgatgacgacgaggacgatgaagacgaagctccc
ggcaaggagtcgcaggaggccgtgccctctgcggcggggaagcaggtggaggacagcggc
accaaggtggacgagtacggggccaaggactaccggcagcagatgccgctgaaggccgac
cacgcctcgcgtcccctctgggtggctcctgatggccatatttttctggaagccttttct
ccagtttacaaatacgcacaggattttttggttgccattgctgagcctgtgtgcagaccg
acccacattcacgagtacaagctgactgcttactcgctgtatgctgctgttagcgttggc
ttacaaacgagcgacatcacggaatatttacaaaaactgagcaagactggcgtcccagat
ggaataattcagtttatcaagctgtgcaccgtcagctatgggaaggtgaagctggtactg
aagcataacaggtattttgtggaaagcacccaccctgatgtcattcagcagcttctgcaa
gaccatgtcattagagactgtcgcctgagaaatgctgagggtgaagaaacagagctcatt
acagagacattcacaagtaaatcagcgatctccaaatccagtgaaggcggctttggtccc
tcaacgtcccagggaacagatgctcagaataagccggatgtcccagctgacttatttgag
ttttatgagcagatggacaaagatgaggaggaggaggaggaaacgcagacagtatctttt
gaagttaagcaggagatgattgaagaacttcagaagcgttgtatccatttggagtacccc
ttgctggcagaatatgatttcagaaatgattctgtgaatcccgatattaatatagatctg
aaacctacagcggttctcaggccctaccaagagaaaagcctacggaagatgtttggaaat
gggcgagccagatctggtgttattgtcttgccatgtggtgctggcaagtctctagtcgga
gtgacggctgcctgtactgtccgcaagcggtgcctggtccttggtaattctgcagtgtct
gtagagcagtggaaagcccagttcaagatgtggtccaccattgacgacagtcagatatgt
cggttcacttctgatgctaaagacaagcccattggctgttctattgctatcagcacatat
tccatgttgggacacacgacaaaaagatcctgggaagcagaaagagtcatggagtggctt
aaaagtcaagagtggggccttatgatacttgatgaagtacatactatccctgcaaaaatg
ttcagacgtgtgctcactattgtacaagctcattgtaaactggggctgactgctaccctg
gtcagagaagatgataaaattgttgacctgaacttcctgatcggaccaaagctctatgaa
gccaactggatggagctgcagaacagcggctacattgctaaagtccagtgtgctgaggtt
tggtgcccaatgtcacctgaattttatagagaatatgtagctatcaaaacaaagaaacgg
atactgctgtacaccatgaacccaaataaattcagagcctgccagttcctgattaagttt
cacgagcgacggaatgataaaatcatcgtatttgccgacaatgtgtttgcgcttaaggag
tatgcaatcagacttgggaaaccctatatatatggtcctactgcacaaggagaaaggatg
caaattttacaaaacttcaagcacaatccaaaaatcaacactattttcatttccaaggta
ggtgacacatccttcgatctcccggaagccaatgttctgattcagatttcgtcccatggt
gggtctcgaagacaggaggctcaaaggctgggacgagtgctgagagccaaaaaaggcatg
gttgcagaggaatacaatgcctttttttattctcttgtatcccaagacactcaggaaatg
gcatattcaacaaagcgacaacggtttcttgtagatcaaggttatagcttcaaggtaata
acaaagcttgcaggcatggaagaagaagaactttcattttcctccaaagaagaacagcag
cagcttctccagaaagtcctacaagcatctgacctggatgctgaggaggaagtagtcgct
ggagaatatggttcaaagtcagctcaggtgtcacgtcgtacgggcacaatgagctctatg
tcaggagcagatgatacagtttacatggaataccactcttcacggagtaaggcatcttca
aataaacacatccatccactatttaaacgcttccggaaatga
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integrated database retrieval system
