Nipponia nippon (crested ibis): 104020439 Help Entry 104020439         CDS       T05756                                  Symbol VPS39 Name (RefSeq) vam6/Vps39-like protein   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism nni  Nipponia nippon (crested ibis) Pathway nni04140   Autophagy - animal nni04148   Efferocytosis nni05132   Salmonella infection Brite KEGG Orthology (KO) [BR:nni00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     104020439 (VPS39)    04148 Efferocytosis     104020439 (VPS39)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     104020439 (VPS39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:nni04131]     104020439 (VPS39) Membrane trafficking [BR:nni04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     104020439 (VPS39) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin Motif Other DBs NCBI-GeneID:  104020439 NCBI-ProteinID:  XP_009472144 LinkDB All DBs Position Unknown AA seq 939 aa AA seqDB search MSVSQSIPFSGCTKTHKGYVGARRAPSGAGSASPATAGAGPADPRFPSPRQLGRAARCRR GRCFVCELPARGLRWGAEEWLLVGTKQGHLLLYRIKKDIVPGEVMSSESVCCNRFEVTLE KSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQQS DTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYL IRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIP IAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLI PVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQ VFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQL VKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHC HIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLG TENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHI IHVWEETGADFHNCLIQLYCEKVQGLMKEYLNSFPADKTPVPAGEEGGDLGDYRKKLLLF LEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHY DRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKA INLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIIT EEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT NT seq 2820 nt NT seq  +upstreamnt  +downstreamnt atgagtgtctcacagtctatccccttttcgggttgtacgaagacgcacaagggctacgtc ggggcaaggagagccccctcaggggcagggagcgcgtcccctgcgaccgctggcgccggc cctgccgacccgcgtttcccgagcccccggcagctggggcgggctgctcgatgtcggcga ggaaggtgcttcgtttgcgagttgccggcgcgggggctgcgctggggcgcggaggagtgg ctccttgttggtaccaaacaagggcatcttctgctttacaggatcaagaaagacatagtg ccaggagaggttatgtcatcagaaagtgtctgttgcaataggtttgaagtgacactagag aaatccaacaagaacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaa attctggtcagtctattagaaaataacatttatgtccatgacctgttgacatttcaacaa atcaccacggtttccaaggcaaaaggtgcatctctcttcacttgtgatcttcagcagtca gatacaggagaagaggtgctgagaatgtgcgtggcagtgcggaagaagctacaactttat ttttggaaggacagagagttccatgaactacagggggacttcagtgtacccgatgtaccc aagtccatggcctggtgtgaaaactccatctgtgtaggcttcaagagggactattacctg atacgcgtggatggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaa ccattggtagctcctgtagcagatggaaaagttgcggttggccaagatgatctaacggtt gtgctcaatgaagaagggatctgtactcagaaatgtgccttgaattggacagatattcct atagccatggaacaccagcctccctatatcattgctgttctgccaaggtatgtggagatc cgcacttttgaaccccggctgctggtacagagtatcgagctgcagagaccacgcttcatc acgtctggaggcacaaatattatatatgtggcaagtaatcactttgtttggcggctcatt ccggtgtccatagccacacagatccagcagcttctgcaggacaagcagtttgagttggct ttgcagttggcagaaatgaaagatgattcagatagtgagaagcgacaacaaattcaccac ataaagaacctctttgccttcaacctcttctgccagaagcgctttgatgaatccatgcaa gtttttgccaagcttggtacagatcccactcacgtgatgggtctgtatcctgacctcctg cccacagattacaggaaacagctacagtatcccaaccccctgccagggctctctggggca gagctggagaaggcacatttagctctgatagactacctaactcaaaaaagaagtcagctg gtgaagaagctaaatgattctgaccatcagtccagtacctcaccactcatggaaggaaca cccacaatcaaatccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgt tacctccatacaaatgtagcactggtggcaccattgctacgtctggagaacaatcactgc catattgaggagagcgagcatgtactaaagaaggcacacaaatatagtgagctgataata ctgtatgagaagaaaggtctgcatgagaaagcattacaggtactggtggatcagtcaaag aaagccaactcacctttgaagggtcacgagaggacagtgcaatatctgcagcatttgggc acagagaacttgcacttggtgttttcctactctgtctgggtgctaagagattttcctgaa gatggactcaagatatttacagaagacctccctgaagtggaagctttgccacgagacaaa gtgctcagtttcttgatagaaaattttaaaagcttgactattccttatctggaacacatc attcatgtctgggaagaaactggtgcagactttcacaactgtctgatccagctatactgt gagaaagtgcagggcttaatgaaagaatatctcaattctttccctgcagataaaactcca gtgcctgctggggaggaaggaggagacttgggggattaccggaaaaagcttctacttttt ttggagaagtctagctggtatgaacctagtcgactaattagtgacttcccctttgatggt ctcctagaagaacgtgctctgctcttgggtcgtatggggaagcatgagcaagctctgttt atttatgttcatattttgaaggacaccaatatggctgaaaactactgccataaacattat gacagaaacaaagatggcaacaaagatgtctatctgtcactgctccggatgtatctgtcc ccacctagtgttcattgcctgggaccaatcaagatggaagtgctggagcctcaagccaac ctgcaggctgctctgcaggttttggaactacatcacagcaaactggatactaccaaggca ataaacctactcccagcaaatacacagattagtgagattcggatcttcttagagaaagtc cttgaagaaaatgcccagaagaaaagatttaatcaagtactcaagaatcttctccatgct gagtttctgagggtccaggaggagcggatcttgcatcagcaagtgaaatgcattattaca gaggagaaggtgtgcactgtatgtaaaaagaagataggtaacagtgcatttgctcgatac cctaatgcaatagttgtgcattatttctgctccaaagaagtcaacacattggacacctga

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