Nipponia nippon (crested ibis): 104022312
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Entry
104022312 CDS
T05756
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
nni
Nipponia nippon (crested ibis)
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nni03009
]
104022312 (PDCD11)
Ribosome biogenesis [BR:
nni03009
]
Eukaryotic type
90S particles
Other 90S particles
104022312 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
HAT_PRP39_C
TPR_14
OB_RRP5
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_12
ARM_TT21_5th
ARM_TT21
TPR_CcmH_CycH
TPR_16
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
104022312
NCBI-ProteinID:
XP_009474296
LinkDB
All DBs
Position
Unknown
AA seq
1835 aa
AA seq
DB search
MASMEENFPRGGIQKKPTEGKTPNPKLERDNLFDIHHEEQSQKRKRSQRDQGKQKKFKAD
KIAAAKDNVVNIEPLAIEALCEGMLLLGCIKEVSDYELVVSLPNGLSGFVPVTQISDAYS
KMLSKQVAQGELLEDLHSLLDMYSPGTLVRCIVTSVEKSADGRRSIKLSIDPKKVNKGLN
ASALASGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPRQKAQNYIKALKRGTDLKIGQNLN
CVIVEVKNEGRVVRLSIDRSEVAASLATEQQNWTLSNLLPGLVVKARVQKVAPLGIKVSF
LSSFTGIVDFMHMDPEKSMNYSPDQVVKACILAVHPTSKVVRLTLRQAFLRPGGSPNQLS
NDRMGAVVEESTVKAFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKTGCKHKCR
IIDYSLMDEMCIVSLKYRIIEARFLQYQDIHTGDVVQGKVLALKPIGMQVKVTDGIKGLV
PSMHLADVILKQPEKKYNIGDEVKCRVLECNPAGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHEGQVVKVMVLKCE
PEQERLLLSFRLSSKPALEDKNECTPKKKQEVKYQIGEMVDVKVLKKKDNGLEVSVLEDE
GNVIASIPTVHLSDFLANCKLLWHCLQEGDVLPRLMCLSDKGDRIILSRKSAVISAVQEE
QVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRRGEPSV
AQGLCELVPGKELQLVVQDVKEDGSALFSGRGLTVPATRYHLGDKNIVPGEKTKALVLHV
DALTSKVYVSLREELLKQRAKQRLTENSQYSAIVQHIAEEFAIVSLLETGQLAAIPIASH
LNDTFRFDSEKLKLGQTICATLKVVKVNDHGVLLAVQGPAKKNGFVRVRNESETALEEML
AAVKHSLSLGDVVTGTVKSIKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTYTLKAGQ
KVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKVTAMLNLKEDSALKKLGL
YDVGQTVTCFVKKYNVLKNWLEVEVTPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISA
TVTGTDVTETNLCLSLTGIQLLEQGTITVGMVTKVTLHIGLTIALPGGKTGRVSIFHLND
TYTENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSNSKVKDVEITCIKDVKKGQ
LVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVN
GKEKHIELSLLPEDTGMPSVLPESLGLPRYDAEEEKREADETEKREELKLKTKRRRGNSE
SEQGVKPKKRKICPADENDSGIEVYYREEEDDDQEEEAAKKKSKIRKPGEAPRLQVSMGF
TWDEDINAVDIPVLNQKEESSESEEDEDPQSKLKKQTKKEKELEKQKKEKELCKLEAALM
DPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQE
KLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEELYHT
MLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGD
PEHAKALFESTLNSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFK
RYLDYEKKFGTTESVLAVKRAALEYVETKSSLADT
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaaaaaacccacagaggga
aaaacacccaaccccaagttagagcgggacaatctgtttgatattcaccatgaagaacaa
tcccagaaaagaaaaaggagccaaagggatcaaggaaagcaaaaaaagttcaaggcagac
aaaatagctgctgctaaagataatgttgtgaatattgaaccactcgcaattgaggcactc
tgtgaggggatgctgctccttggctgtataaaagaagtcagtgactacgaattagtcgtc
agcttgcccaatggactttcaggatttgtgccggtcacgcagatcagcgatgcctacagc
aaaatgctgagcaagcaggtggcccaaggagaactcctggaggacttgcattcgctcttg
gacatgtattctccagggacactggtcaggtgcattgtaaccagtgttgagaaaagtgcc
gacggacgtcggagtatcaaattgtcgatcgaccccaagaaggtcaataagggtctgaac
gcttcagcactagcatcgggcatgctgctctctggctttgtgtccagtgtggaagaccat
ggctacctcattgatattggagtcagtgggactcatgcgttcctccctcgtcagaaagcc
caaaattacatcaaagcactgaagagagggactgacttgaaaataggccagaacctgaac
tgtgtcattgtggaagtaaagaacgagggaagagtggtccgtttgtccattgatcgatca
gaggttgctgcatcccttgcaacagagcaacagaactggaccctctctaatttattacca
gggctggtggtgaaagctcgagtgcagaaggtggccccactcgggatcaaagtgagcttt
ctgtcttccttcactggcattgtggatttcatgcacatggatccagagaaatccatgaac
tattctccagatcaagtggtgaaagcttgcatccttgctgtccaccccacttccaaggta
gtgcggcttactctacggcaggccttcctccgccctgggggatccccaaaccagctgtcc
aatgatcgcatgggggcagtggtggaagagtcgacagtgaaagctttctacaagcaattc
ggtgctgtctttgagcttgacgatggcactcttgcatttgcacggttgaaacatctctca
aaaaccagaaaatcctttaaacctggggcatttaagacaggatgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaagtatcggattatt
gaagcacggtttctgcaatatcaagatatccacacaggggatgtggtgcagggcaaagtg
cttgcattgaaacccattgggatgcaggttaaagtgaccgatgggattaaagggctcgtg
ccatccatgcatctcgctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaagtgtcgggtgctagagtgcaatcctgcaggaaagaagctgatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccaattatgaagatgcaaaa
ccaggtctaatcacacatggctttgtggtgtgtgcaagggagtttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgagctcagagcccatatct
tgtccagataaagtcttccatgaaggccaggttgttaaagtaatggtcttaaaatgtgag
cctgagcaggaaagactcttgttatccttcaggttatcaagcaagcctgccctggaggac
aaaaatgaatgtactccaaagaagaaacaggaagtgaaatatcaaataggagagatggtt
gatgtgaaagtcttgaagaagaaagataacgggctagaggtttctgtcttagaagatgaa
ggcaatgtgatagcctcaattcccacagtgcacctctctgactttcttgctaactgcaag
ctcctgtggcattgtcttcaagagggagatgtcctgcccagacttatgtgcctaagtgac
aagggagaccgtattatcttgagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgagaaatttctctgaaatccagcctgggatgctgttgactggttacgtgagg
aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcgccc
aaagtgagcatgagtgacaagtttgtgacggacaccaaggaccactttgtggtgggacag
actgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtcagagtgcagctcaggtgattctgctgcggagagctttgccctgctgaatcaa
tatttcaaggagatgaaagaaatcaggaacttgttgagaagaagaggggagcccagcgta
gcccaagggctttgtgagttggtgcctgggaaggagctgcagctggtggtgcaggacgtg
aaggaggatggctcagcgctgttcagtggcaggggcttgactgtaccagccactcgctac
catttgggagacaaaaatattgttcctggtgagaaaaccaaggcattggttcttcatgtg
gatgccctcacatccaaggtgtatgtttctcttcgggaagaactgttaaaacaaagagcc
aagcaacgtctcacagagaactcccagtactctgccatcgtgcagcacatagcagaagag
tttgccatcgtgtctttgttggaaacaggccagctggcagctatccccatagcctctcac
ttaaatgacactttccgctttgactcagaaaaactgaagttgggacaaacaatctgtgca
accttgaaagtggtgaaggtgaatgaccatggagtcttgttagcagtacaaggcccagca
aagaagaatggttttgtaagggtccggaacgaatctgagacagcattagaagagatgctt
gctgctgtgaaacactcgctttccctgggggatgttgttactggtactgttaaatccatc
aaaccaacccatgtcacagttgctattgatgacaagctgacaggttcaatccatgcatcc
cggattctggatgaagtgcctataggctcttttccaacatatactttgaaagctggacag
aaggtgactgcccgagtcattggaggcagagatgtgaatactcacaggtacctgcccatc
acccatccacacttcacacggtccattccagagctcagcattcgaccaagcgaaatagaa
gggaaggtcacagcaatgctgaaccttaaagaagacagtgccctcaagaaacttggactc
tatgatgttggacagacagttacctgttttgtgaaaaagtataacgtgctcaaaaattgg
ctggaggtagaagtcacccctgacattcgaggaagagttcctcatctgctgctgtctttg
aacaccaaggtcctgaaacatccagagaagagcttcaaaaatggccaggcaatatcagct
acagtgactggaacagatgtcaccgaaacgaacctctgcttgtcactcacaggaattcag
ttactggagcagggcaccatcactgtaggcatggtaacaaaggtgacactacacattggt
ttgaccattgcgctgccaggtgggaagactggcagagtgagtatctttcacctgaacgat
acttacacggagaatcctctgggtgacttcaaagttggcaagattgtcaggtgttacatc
ctctccaatgagaatggcaaaatccagttatctctccggcaatctcggctaaacccaaag
agcaacagcaaagtgaaggatgttgaaataacatgtattaaggatgttaaaaaaggccag
ctagtgagaggctatgtcaaatcaatcactccgtcaggtgtattctttggcttgtctact
tctcttctgggccgaatcctgttccagaatgtttccccttactttgtacagaaacactcc
ttatatgaaaagtacctgcctgaaggaaagctgctcactgccaaggtgcttggtgtaaat
ggaaaagaaaaacatattgagctctctctcctgcctgaggacaccgggatgccaagcgtc
ttgcctgaatccctaggcctaccacgatatgatgcagaggaagagaaaagagaggcagat
gaaacggaaaagagagaagagcttaagctgaagacgaaacggagaagaggaaactctgaa
agtgagcagggggtgaagccaaaaaaaaggaagatctgcccagcagatgaaaatgacagt
ggaattgaggtatattaccgggaggaagaggatgatgaccaggaggaagaggcagctaaa
aagaaatctaagataaggaaacctggtgaagctcccaggctgcaggtttctatgggcttc
acctgggatgaggacataaatgcagtggacatacctgtgctgaatcagaaggaagagagc
tcagagagcgaggaggatgaggatccgcagtcaaagctgaagaaacaaaccaagaaggag
aaggagctagagaagcagaagaaggagaaggagctctgcaaattagaggcagccctgatg
gaccccagtcgacagcctcagtcagcagatgactttgaccgcctggtgctgagcagtccc
aacagctccatcctctggctacagtacatggctttccacctccaggctaccgagattgag
aaggccagagctgtggcagagagagcgcttaaaacaatctgcttcagggaagaacaggag
aagctgaatgtctgggtagctctactgaacttggagaacatgtatggtactgaggagaca
ctgatgaaggtctttgagagagctgttcaatacaatgaacctttgaaagtcttccagcat
ctgtgtgacatctatgcgaattccgagaagtacaagcaagcagaagagttgtaccacaca
atgctgaagcgcttccgtcaggagaaatctgtgtggctgaaatacgcctctttcctcctg
aagcaaggccagactgaggctacacacaggcttttggagcgtgctctcaaggctttgccc
accaaagaacatgtggatgtaatttcaaggtttgcacagctggagttccgttttggggac
ccagaacatgccaaggccctctttgagagcaccctcaacagctatcccaagcgaacagac
atctggtccatctacatggacatcatgatcaaacatggcagccagaaggaagttcgggac
atctttgagagggtcatacacctgagcttggcaccaaagaagatgaaattcttctttaaa
cgctacctggattatgagaagaaatttggtacaacagaaagtgtcctggctgttaaaaga
gcagcacttgagtatgtggagaccaagagttcccttgctgacacctaa
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integrated database retrieval system
