Nipponia nippon (crested ibis): 104022453
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Entry
104022453 CDS
T05756
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03008
Ribosome biogenesis in eukaryotes
nni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104022453 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104022453 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nni03021
]
104022453 (XRN2)
03019 Messenger RNA biogenesis [BR:
nni03019
]
104022453 (XRN2)
03009 Ribosome biogenesis [BR:
nni03009
]
104022453 (XRN2)
03016 Transfer RNA biogenesis [BR:
nni03016
]
104022453 (XRN2)
Transcription machinery [BR:
nni03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104022453 (XRN2)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104022453 (XRN2)
Ribosome biogenesis [BR:
nni03009
]
Eukaryotic type
Pre-60S particles
RNases
104022453 (XRN2)
Transfer RNA biogenesis [BR:
nni03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104022453 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104022453
NCBI-ProteinID:
XP_009474457
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MRRRFGRKGSRPVALLLLGDHRAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIHPCT
HPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASK
EGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLN
SDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLAT
HEPNFTIIREEFKPNKPKPCGLCNQMGHEVKDCQGLPREKQGKHDQFADSLPIAEQEFIF
IRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRL
VNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRK
RMKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNTSLTSD
GSPSPAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSYV
EGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFP
AASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALE
EVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGMQGKLT
LNENAVLPDQPVESPVPMLRDLAQNSAVSISFKDPQFDEDFVFKATVLPGAKKPAPVLKP
GDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPREMPGMYANAVPLGTYGSP
YARPLLSGQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRMLQSPNQYQP
SQYQGLGGPMSYPQRPEDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggcgatttggccggaagggctcgcgccctgttgcgctgctgctcttgggggac
caccgggctaaagagtgcaatggcgtcaaggctccgattgatacaagcaaacctaaccct
aacgaggtggagtttgataacctgtatttggatatgaatggtataattcacccttgtaca
catccagaagacaagccagcgcccaaaaatgaagatgaaatgatggttgcgatttttgag
tatatagacaggatcttcaacattgtaagaccaaggcgacttctttacatggctatagat
ggagtagctccacgggcaaaaatgaatcaacagcggtcaagaagattcagagcatcaaag
gagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctggcaaaaggt
ggcattcttcctccagaagaagtgaaagagagatttgacagcaactgcattactccggga
acagagtttatggacaatcttgctaaatgtctccgctattacattgctgaccgtttgaac
agtgacccagggtggaaaaatttgacagttattttgtctgatgccagtgctcctggtgaa
ggggaacataaaatcatggattacattagaagacaaagagctcaaccaaaccatgaccca
aacactcatcattgtctgtgtggggctgatgctgatctgattatgcttgggttagctaca
catgaaccaaacttcactataattagggaagagtttaaaccaaataaacccaagccatgt
ggtctttgtaaccaaatgggtcatgaggtaaaggattgccaaggtttgcccagagaaaaa
caaggcaagcacgatcagtttgcagacagtcttcctatcgctgaacaagaatttatcttc
atccgattatgtgttttgagagagtatttggaaagagaactcactatggccagcttgcct
ttcacttttgattttgaaagaagtgttgatgactgggtctttatgtgcttcttcgtggga
aacgactttcttcctcatctgccctctttggagatcagggagggagcaattgatcgcttg
gttaacatatataaaaatgtggtgcacaaaactgggggctacctcacagaaagtggtttc
gtcaacctacagcgagtccagatgatcatgttagctgttggagaagttgaagatagtatt
ttcaaaaagagaaaagatgatgatgataactttaaaagacggcaaaaagaaaaaaggaaa
agaatgaagagggatcagccttcttttattcctggtggacagttttcccctcaagctctg
ggaaatcgatctagtcctcaggcaatcagtaaccctagacaagccgcctttgagatgaga
atgcatgacagacagaattccacaacttcatcatctccaaataccagcctcacttctgat
ggcagcccatccccagcaggaggaattaagcgaaaagctgaagatagtgacagcgaacct
gagccagaggataatatcaggttatgggaaacgggttggaaacagcgctactataaaaac
aaatttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacagtcctatgtg
gaagggctttgctgggttctcagatattattatcagggctgtgcatcctggaactggtat
tacccttttcactatgctccgtttgcttctgactttgagggtattgcagacatgccttca
gattttgagaaaggctcaaaaccgtttaagcctcttgaacaacttatgggagtatttcca
gctgcaagtggaaattttctgccgccaacgtggaggaagctcatgacagatccagaatca
agcataattgacttctaccctgaagattttgctattgatttaaatgggaagaaatatgct
tggcaaggtgtcgcattattgccatttgttgatgagcgacgccttagagctgccctggaa
gaagtctaccctgacctcactcctgaagaaagcagaagaaatagccttggtggtgatgtt
ctctttgttggaaaacaccatccactttgtgactttattgtagagcagtacaagaccaaa
aacacagagccagtggatatacccccagagctgtgccatggaatgcagggaaagctgacg
ctgaatgaaaatgctgttcttccagatcagccagtggagtctcccgttccaatgctgcgt
gatcttgcacagaattctgcagtcagtatctctttcaaagatccacaatttgatgaagac
tttgttttcaaggctacagtgttacctggcgcaaagaaacctgctccagttctgaagcca
ggagactgggaaaaaaccaacaatgatggcaggccttggagaccgcagcttggttttaat
cgagacagaaagccagtccatttggaccagtcagcgtttagaactttaggccatacgatg
ccaagggagatgccaggaatgtatgccaatgcggtacctcttggaacttacgggagccca
tacgccaggccgcttctgagtgggcagcagcagattccgaaactgttgtcaaatctcaga
ccccaggagtcttggcgaggtcctacgcccttgtttcaacagacgccacaaagaactgct
ggggccgctcctcttcttgcctggaaccgcatgctgcaatccccaaatcagtaccagcca
agtcagtaccaggggctgggcggaccgatgagttacccacagagacccgaagatcggatg
gacaggggaagacaggcatatggccccgggaggccctacccgctgccaccgccctcggga
agatacagctggaattag
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