KEGG   Nipponia nippon (crested ibis): 104023614
Entry
104023614         CDS       T05756                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03250  Viral life cycle - HIV-1
nni03272  Virion - Hepatitis viruses
nni04144  Endocytosis
nni04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    104023614
   03272 Virion - Hepatitis viruses
    104023614
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    104023614
  09143 Cell growth and death
   04217 Necroptosis
    104023614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:nni04131]
    104023614
   03400 DNA repair and recombination proteins [BR:nni03400]
    104023614
Membrane trafficking [BR:nni04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    104023614
DNA repair and recombination proteins [BR:nni03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    104023614
SSDB
Motif
Pfam: AAA PH_17 TIP49 AAA_16 AAA_22 AAA_14 AAA_25 AAA_5 IstB_IS21 RuvB_N DUF815 AAA_2 AAA_33 NPHP3_N AAA_18 AAA_17 RNA_helicase nSTAND3 AAA_24 PhoH Mg_chelatase AAA_28 ResIII AAA_7 Parvo_NS1 bpMoxR NACHT DUF5906 AAA_30 Sigma54_activat Sigma54_activ_2 MCM AFG1_ATPase
Other DBs
NCBI-GeneID: 104023614
NCBI-ProteinID: XP_009475734
LinkDB
Position
Unknown
AA seq 327 aa
MPSGQRAGARPVLSQHCRAARAAAFLRQVGRGVQAAAGFPLRVVAGAGQDGLQPDLLPGP
IVLRCLPFPTPAPAAVKFMREVTPYIKKPSLVSDLPWEGAAPQSPSLSGSEDSGSPQHQG
PRDRKVIPLKMCFAARNLSMPDLENRQVPSPAADGIGGAIMMEKPNVRWSDVAGLEGAKE
ALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL
MSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQA
PGPDYNPQPAWGAAGQGKAERKGQEPR
NT seq 984 nt   +upstreamnt  +downstreamnt
atgccgtccgggcagcgcgcgggggctcggccggtgctcagccagcattgccgcgcagcc
agagcagccgccttcctgcggcaggttgggcgaggggtgcaggcggcggccgggtttcct
ttgcgcgtggtggccggggcgggtcaggatgggctgcagcctgacctcctgcccggcccc
attgtgctgcgctgccttccctttcctacgcccgcgccggctgccgtgaagttcatgcgg
gaggtgaccccctacatcaagaagccctcgctggtgtcggacctgccgtgggagggggct
gccccgcagtcgcccagcctgagcggcagcgaggactcgggctccccccagcaccagggc
ccccgcgaccgcaaggtgatccccctcaagatgtgcttcgctgccaggaacctcagcatg
cccgacctggagaacagacaggttccctctccggctgccgacggcatcggaggtgccatc
atgatggagaagcccaacgtgcggtggagtgacgtggccggcctggagggagccaaggaa
gctctgaaggaagccgtgatcttgcccatcaagttcccacacttgttcaccgggaagcgc
acgccctggcgagggatcctgctcttcgggccccccggcaccggcaagtcctacttggcc
aaggccgtggccaccgaggccaacaactccaccttcttctccgtgtcctcctcggacctg
atgtcaaagtggctgggagagagcgagaagctggtgaagaacctctttgagctggcgagg
cagcacaagccctccatcatcttcatcgacgaggtggactcgctgtgcggctcccgcaac
gagaacgagagcgaggcggcccggcgcatcaagacggagttcctggtgcagatgcaggcc
ccaggccctgactacaacccccagcctgcctggggagcagccgggcagggaaaggcggag
aggaagggccaggagccgcgctga

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