Nocardia nova: NONO_c54220
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Entry
NONO_c54220 CDS
T03032
Name
(GenBank) putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nno
Nocardia nova
Pathway
nno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NONO_c54220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nno03019
]
NONO_c54220
Messenger RNA biogenesis [BR:
nno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NONO_c54220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AHH20202
UniProt:
W5TLP7
LinkDB
All DBs
Position
complement(5917696..5919684)
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AA seq
662 aa
AA seq
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MSDPVNPRPRRRSASREAGAPAPAESRKAPVVPAPEPVSPPLAGAGREQPVREERRAEQS
SRGGRGEPSGRGEPGGDRGRSARRSGRGRPLRGREQSAPQPVSAALPAGLPPKPPKNGLR
VYALGGIGEIGRNMTVFEYDGTLLIIDCGVLFPEDQQPGVDLILPDFRPIEDRIDDVAAV
VLTHGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRLQPKLIEVTEGQKTTHG
PFDCEYFAVNHSIPDAIAVAVRTPAGLVLHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVTPEREIGPVLDNVIGKAKGRVIVASFASHVHRIQQVVDVAQRYNR
RVCFVGRSMVRNMQIAQDLGYLTIPEGLVVDLDQAANLPVHKLVLISTGSQGEPLSALSR
MARGDHRQINIRADDLVVLASSLIPGNENAVFAVVNGLARLGATVVTQQSAKVHVSGHAS
AGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEERVVLAEDGVVVDLVDGIAS
IVGRYPVGQVYVDGLSVGDVGESTLSDRLVLGEGGFIAITVAVDETTGKAVSAPEVSGRG
FSDDPGALMGAQELVEAELLRLAGEGVTDTHRIAQGVRRVVGRWVADTYRRRPMIVPTVI
GV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccggtgaatccccgtccccgccgccggtccgcgagccgggaggcaggcgcg
cccgctccggccgaatcgcgcaaagcgcccgtagtgcctgcgccggaaccggtttcgccg
ccgctcgccggtgcgggccgtgagcagccggtgcgcgaggagcggcgtgccgaacagagt
tcccgcggcggacgcggcgaaccgtccggacgcggcgagccgggtggcgatcgcggccgg
tcggcccgccgttcgggtcggggacgtccgctccgcggccgggaacaatctgcgccgcaa
ccggtttcggccgcccttccggccgggttgccgccgaaaccgcccaagaacggcctgcgg
gtctacgccctcggcggtatcggcgagatcggccgcaacatgaccgtcttcgaatacgac
ggcaccctgctcatcatcgactgcggtgtgctgttcccggaggatcagcagcccggtgtc
gatctgatcctgccggacttccggccgatcgaggatcgcatcgacgatgtggccgcggtg
gtgctgacccacggtcacgaggaccacatcggcgcggtgccgttcctgctgcgactgcgc
cccgacatcccggtggtgggttcgaagttcaccctcgcgctggtggcggcgaaatgccgc
gaacatcgcctgcagcccaagctgatcgaggtcaccgagggacagaagaccacgcacggt
ccgttcgactgcgaatacttcgcggtcaaccactcgattccggatgccatcgcggtcgcg
gtccgcaccccggcgggcctggtcctgcacaccggcgacatcaaactcgatcagctgccg
ctcgacggacggctcaccgacctggccggattctcccggctcggtgacgagggcgtggac
ctgttcctggtcgactcgaccaatgccgaggtgcccggattcgtcacaccggaacgcgag
atcgggccggtgctcgacaatgtgatcggcaaggccaagggccgggtcatcgtggcgtcg
ttcgccagtcacgtgcaccgcattcagcaggtggtcgatgtcgcacagcgctacaaccgc
cgggtctgcttcgtgggccgttcgatggtccgcaatatgcagatcgcccaggatctgggc
tatctgaccattcccgaggggctcgtggtcgatctggaccaggccgcgaacctgccagtc
cacaagctggtgctgatctcgaccggttcgcagggcgagccgctgtcggcgctgtcgcgg
atggcgcgcggcgaccaccgtcagatcaacatccgcgccgacgatctcgtggtcctggcc
tcctcgctgatccccggtaacgagaacgcggtgttcgccgtggtcaacggcctggcccgg
ctcggcgcgacggtggtcacccagcagagtgcgaaggtgcacgtctccgggcacgcctcg
gccggtgaactgctctacctgtacaacgcggtgcggcccaccaacgccatgccggtacac
ggtgagtggcggcatctgcgggccaatgcggcgctggccgtggccaccggtgtgccggag
gagcgggtcgtgctggccgaggacggcgtggtggtcgacctggtggacggcatcgcctcg
atcgtgggccgctatcccgtcgggcaggtgtacgtcgacggcctgtcggtcggtgacgtc
ggtgaatccacgctgtcggatcgtctggtgctcggtgagggcggcttcatcgcgatcacc
gtcgccgtcgacgagaccacgggcaaggcggtcagcgcaccggaggtcagcggccgcggc
ttctccgacgatccgggtgcgctcatgggcgcgcaggaactggtcgaggccgagttgctg
cgcctggcgggcgaaggcgtcaccgacacccatcgcatcgcgcagggggtgcgccgggtc
gtgggccgctgggtcgccgacacctaccgccgtcgcccgatgatcgtgcccacggtcatc
ggcgtctga
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