Nocardia nova: NONO_c59290
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Entry
NONO_c59290 CDS
T03032
Name
(GenBank) putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nno
Nocardia nova
Pathway
nno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NONO_c59290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nno03019
]
NONO_c59290
03009 Ribosome biogenesis [BR:
nno03009
]
NONO_c59290
Enzymes [BR:
nno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NONO_c59290
Messenger RNA biogenesis [BR:
nno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NONO_c59290
Ribosome biogenesis [BR:
nno03009
]
Prokaryotic type
rRNA processing factors
NONO_c59290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AHH20706
UniProt:
W5TU21
LinkDB
All DBs
Position
complement(6453670..6457287)
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AA seq
1205 aa
AA seq
DB search
MAEQEPQGTSQTNGESTSNGVAGGGEAAQLPERIRVHALAKLLGTTSKRILAHLTELGAE
ARSAQSSLDRTVAESVRDALVPQQPADTAQPPAAPAESESSATTDSGAGQGPDASSAPAV
TETAEAEPPADATASEPVTAEPTVGAGATAVAGPVATTAATGSPAEAVTAEPAAPVAPAS
GASAGETTPAAGQPAASQGAAESAQPVVAESAAASAPADTTSATNGVTATAEPAQAPEPA
APHTSLFTSPFQHSAPQPEQPVFEAPSIAAAPLFLPPDAAAAEEMRRKRRAEREAAEHEA
AEQRAAEHKAAEQAAEQKAAEQKTAERKAAEQKTEAAESAAAESAEQPQAAEAETESSEW
DDEQSRDEQEDGGRSRRRRRGRRGRGRGRGEQHADNDSEDESDDEDTDAQATTGEAEGSA
ADQAEDDDDSSSTPEGSTRRRRRRRRRKAGDDNESDTATSEDDPPNTVVHEREPRNKRRA
VDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEFLARREAVDRVMVVREKSFPVT
ADHTHAGATTQVAVLEDNILVEHFVTNTGTASMVGNVYLGKVQNVLPSMEAAFVDIGRGR
NGVLYAGEVNWEAAGLGGKERKIEQALKPGDTVLVQVSKDPVGHKGARLTTQISLAGRFL
VYVPGGTSTGISRKLPDTERKRLKEILRDIVPQDAGVIIRTASEGVSENELARDVERLQV
TWKTIEKQAENGSGAPKTLYEEPDLLVKVVRDLFNEDFSKLVIEGDRAWTTVENYVRTVA
PDMLSRVERFENTGVDVFGSLRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK
FTGAGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTES
LGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHNYPVETAPAED
SGSGRREGRRRRKDKDRDKDKPQPAAPAPVAEDEAHHEEEAAAKRAHPVALAMAAHSSDD
VTAEGDGAEAVVAEATDAAADESAAVAEVPSGSAESADTTAEADRPDSGAESGRGRTRRS
ERNGTRDRRGGESRRRAERSAEASQPAETSDEATGTPVPSATETGTPVTPEPETPSPRRG
RRRVARTTTTLSTDNQASVFVLSDSEQEDTPKFSLDDIAAPEVTPRPRTRRRTAGRAAGA
PESPN
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaacaagagccgcagggaacgtcgcaaaccaatggtgaatccacctccaacggg
gtggccgggggaggggaggcggcgcagttgccggaacgaatccgggtgcacgcactggcg
aagctcctgggaaccaccagcaaacgtatccttgcccacctgaccgagctgggtgccgaa
gcacgcagcgcccaatccagcctggaccgaaccgtcgccgaatcggtgcgcgacgccctg
gtcccgcaacaacccgccgacaccgcacagcccccggccgcaccggccgagagcgaatct
tcggcgaccaccgattccggcgccgggcaagggccggacgcatcgtcggctccggccgtc
accgagaccgccgaagccgagccgcctgctgatgcgaccgcctccgagccggtcaccgcg
gagccgaccgtcggtgccggggcgactgccgtcgccgggcctgtcgctacgaccgctgcc
accgggtcgcccgccgaggccgtcactgcggagcctgccgctccggtagcgcccgcatcc
ggggcaagtgcgggcgagaccacacctgcggccggacaacccgcagcatcacagggcgcg
gccgagtccgcgcagcctgtcgtcgcggagtcggcggcggcatcggcccctgccgatacg
acctctgccaccaatggggtcaccgcgaccgccgagcccgcccaggctcccgaacccgcg
gcgccgcacacctcgttgttcaccagtccgttccagcactcggcgccgcagcccgagcag
ccggtcttcgaggcgcccagtatcgcggccgccccgctgttcctgccgccggatgccgca
gccgcggaggagatgcggcgcaagcggcgggccgagcgcgaggccgccgaacacgaagct
gccgagcagcgggccgccgagcacaaagcggcggaacaggccgctgaacagaaggccgca
gagcagaagaccgccgagcggaaggctgccgagcagaagaccgaagctgcagagtccgca
gcggcggaatccgccgagcagccgcaggccgccgaggccgagaccgaatcttccgagtgg
gacgacgaacagtcccgggacgagcaggaggacggcggtcgttcccgtcgtcgccgccgg
ggccgtcgcggtcgcggccggggtcgcggtgaacagcacgccgacaacgactccgaggac
gagtccgacgacgaggacaccgacgcgcaggccaccaccggtgaagccgagggaagcgcc
gccgatcaggcggaggacgacgacgattcgtcgtcgacgccggagggctccacgcgccgt
cgccgtcgccgtcgtcgccgcaaggccggtgacgacaacgagtccgacaccgccacgtcc
gaggacgatccgccgaacaccgtcgtgcacgagcgcgaaccgcgcaacaagcgccgcgcc
gtcgacgaggtacagggcatcagcggttccacccggctggaggccaagcggcagcgtcgt
cgtgatggccgcgaggccggtcgccgccgcccgccgatcctgaccgaatcggaattcctg
gcccgtcgcgaagcggtggaccgggtcatggtggtccgggagaagtcgttcccggtcacc
gccgatcacacccatgccggtgccaccacacaggtcgcggtgctcgaggacaacatcctc
gtcgagcatttcgtcaccaacaccggcaccgcgtccatggtcggcaacgtctacctgggc
aaggtgcagaatgtgctgcccagcatggaagcggcgttcgtcgatatcggccgcggccgc
aacggtgtgctgtacgccggtgaggtgaactgggaggccgccgggctcggcggtaaggag
cgcaagatcgagcaggcgctcaagcccggtgacaccgtgctggtgcaggtcagcaaggat
ccggtcgggcacaagggcgcccgactgaccacgcagatcagtctcgcgggccgcttcctg
gtctatgtcccgggcgggacctcgaccggaatcagccgcaaactgcccgataccgagcgc
aagcggctcaaggagatcctgcgcgatatcgtcccgcaggacgccggggtgatcatccgc
accgcgtccgagggtgtgagcgagaacgaactcgcccgcgatgtggagcggctgcaggtc
acctggaagaccatcgagaagcaggccgagaacgggtccggtgcgccgaagaccctgtac
gaggagcccgacctgctggtcaaggttgttcgtgatctgttcaacgaggacttctcgaag
ctggtcatcgagggcgatcgtgcctggacgacggtggagaactacgttcgcacggtcgcg
ccggacatgctgtcgcgggtcgagcgcttcgagaacaccggtgtggacgtcttcggcagc
ctgcgtatcgacgagcaactggccaaggcactcgatcggaaggtgtggctgccctcgggc
ggcaccctggtgatcgaccgcaccgaggcgatgacggtgatcgacgtcaacaccggcaag
ttcaccggcgccggtggcagcaacctggaggagacggtcacccgcaacaacctcgaggcc
gccgaggagatcgtgcggcagatgcggttgcgcgatatcggcggcatgatcgtcgtcgac
ttcatcgacatggtgctcgaatccaaccgggatctggtcctgcgcaggctcaccgagagc
ctgggccgcgaccgcacccgccatcaggtgtcggaggtgacctccctcggtctggtgcag
atgacccgcaagaagctgggcaccggcctggtcgaggcgttctccaccacgtgtgagcat
tgccacgggcgcggcatcatcgtgcacaactacccggtcgagacggcgcccgccgaggat
tccggttcgggccgtcgcgagggccgtcgccgccgcaaggacaaggatcgcgacaaggac
aagccgcagcccgccgcacccgcaccagtcgccgaggacgaggcgcatcacgaggaggag
gccgccgccaagcgtgcccacccggtggcactcgccatggcggcgcacagctccgacgat
gtgaccgccgagggagacggtgccgaagccgttgtcgccgaggccacggacgcggccgcc
gatgagtcggcagccgtggccgaggtgccgtccggttcggccgagtccgccgataccacc
gccgaggccgaccggccggattccggcgcggagtcgggtcggggacggacgaggcgatcc
gaacggaacggaacccgcgaccgccgtggcggggagtcccgccgccgggccgagaggtcc
gcggaggcatcgcagcccgccgagacgtccgacgaggcgaccggcactcccgtgccgtcg
gcaaccgagaccggtactccggtcaccccggagccggagaccccgagccctcggcgcgga
cgccgccgggtcgcgcgtacgaccacgaccctgtccaccgacaaccaggcctcggtcttc
gtcctctccgacagtgagcaggaagacaccccgaagttcagcctggacgacatcgccgcc
cccgaggtgaccccgcgccctcgcacccgtcgccgcaccgcaggcagggcagcaggcgcc
ccggagtcgccgaactga
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