Nocardia nova: NONO_c69360
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Entry
NONO_c69360 CDS
T03032
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nno
Nocardia nova
Pathway
nno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NONO_c69360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nno03021
]
NONO_c69360 (rpoC)
03400 DNA repair and recombination proteins [BR:
nno03400
]
NONO_c69360 (rpoC)
Enzymes [BR:
nno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NONO_c69360 (rpoC)
Transcription machinery [BR:
nno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NONO_c69360 (rpoC)
DNA repair and recombination proteins [BR:
nno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NONO_c69360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHH21701
UniProt:
W5TWW9
LinkDB
All DBs
Position
complement(7565157..7569110)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDDLRHNELTTLEAEMEVEKKTIADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGSMGAEAIQKLMETFDIEAEAENLRETIRTGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTRLEEGAKGEYR
AATKDEAEFGVYSSPAEAQMAVDRGELTVRSLIKVRLTNQRPPKETEAELFPEGWQRGDA
WTIKTTLGRVIFNDLLPADYAFIDEPMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKADIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGILVAI
AEKLADGSIIRDAHVETSTYARTLASDAVDANGNVVVEKGHDLGDPAIEALLEAGVTEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRIRLEDDDRFYKITIIPDDGSDEVVYDKL
SKRQRLRVFKHDDGSERLLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERSEFEAANRRSVAEGADP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPEGFGATTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgcggaagacatt
cgcaactggtctttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtgccgagtcggctcggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgccgtcgac
gacgatctgcgccacaacgagctcaccacgctcgaggcggagatggaggtcgagaagaag
accatcgccgaccagcgcgacgccgacctcgaggctcgtgcgcagaagctggaagccgat
ctggccgagctcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagttggctcccaagcagctcatcgtggacgaggtcctc
taccgcgagctgcaggaccgctacggcgagtacttcaccggttccatgggcgccgaagcc
atccagaagctgatggagaccttcgacatcgaggccgaggccgagaacctgcgcgaaacc
attcgcaccggtaagggccagaagaagctgcgcgcgctgaagcggctcaaggtcgtcgcc
gcgttccagaccaacggcaactcgccgatgggcatggttctcgacgccgttccggtgatc
ccgccggagctgcggccgatggttcagctcgacggtggccgcttcgccacctcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggacccggtaaccgcccgctgaag
tccctgagcgatctgctcaagggtaagcagggtcgtttccgtcagaacctgctcggtaag
cgcgtcgactactccggccgttccgtcatcgtcgtcggtccgcagctgaagctgcatcag
tgtggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
gcccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtcatgctgaaccgc
gcgcccaccctgcaccgcctgggtatccaggccttcgagccgctgctggtcgaaggtaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtccccggcgtccggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgttctacctgacccgcctggaagagggcgccaagggcgagtaccgc
gcggccaccaaggacgaggccgagttcggcgtgtactcctcgccggccgaggcgcagatg
gcggtggaccgcggtgaactcaccgtgcgttcgctgatcaaggtgcggttgaccaaccag
cgtccgccgaaggagaccgaggcggagctgttcccggagggctggcagcgcggcgacgcg
tggaccatcaagaccactctgggccgggtcatcttcaacgatctgctcccggcggactac
gcgttcatcgacgagccgatgccgaagaagcggcaggcggcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggtttc
tactgggccacgcgttcgggtgtcaccgtctccatgtcggacgttctggttccgccggag
aaggccgacatcatggagcgctacgaggcgcagtccgaccagatcgagaagaagtaccag
cgcggtgctctcgaccaccaggagcgcaacaacgccctggtcaagatctggcaggaagcg
accgaagaggtcggtaaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggcgccacgggtaacttcacccagactcgtaccctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcattccgcggccgatcaagtcctccttccgt
gagggcctgaccgttctggagtacttcatcaacacccacggtgcgcgaaagggtctggcc
gacaccgcgcttcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgcggcatcctcgtcgcgatc
gcggagaagctggccgacggctcgatcatccgcgacgcccatgtcgagaccagcacctac
gcccggacgctggcctccgacgcggtcgacgcgaacggcaacgtcgtggtcgagaagggt
cacgatctcggtgacccggcgatcgaggcgctgctcgaggcgggtgtcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggcgtgtgcgcgacctgctacggccgc
tcgatggcgaccggcaagctggtcgacatcggtgaggccgtcggtatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggtgacgacatcaccggtggtctgcctcgtgtgcaggagctcttcgaggctcgtgtgccc
aagggcaaggcgccgatcgcggaggtctccggccgcatccggctggaggacgacgaccgc
ttctacaagatcaccatcattccggacgacggttcggacgaagtggtctacgacaagctg
tcgaagcgtcagcgtctgcgggtgttcaagcacgacgacggctccgagcgtctgctcgcc
gacggcgatcacgtcgaggtcggccagcagctgctggagggctcggccgatccgcacgag
gtgctgcgcgtgatgggtccgcgtcaggtgcaggtccacctggtccacgaggtccaggag
gtctaccggtcgcagggtgtgtccatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgtgtcaccatcatcgactcgggtgcgacggagttcctgcccggctcgctg
gtggagcgctcggagttcgaggcggccaaccgccgctcggtcgccgagggcgccgatccg
gcgtcgggtcgcccggtgctgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgtcggcggcctccttccaggagacgactcgtgtcttgacggatgcggcgatcaactgc
cgctccgacaagctgatcggcctgaaggagaacgtgatcatcggtaagttgatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggtgcagcccaccgaggaagctcgggcc
gcggcgtacgcggtgccgtcctacgacgacacctactacagccccgagggcttcggcgcc
accacgggtgcggcggtgccgctggacgactacgggttcagcgactaccggtaa
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