KEGG   Nestor notabilis (Kea): 104402218
Entry
104402218         CDS       T08494                                 
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
  KO
K06100  symplekin
Organism
nnt  Nestor notabilis (Kea)
Pathway
nnt03015  mRNA surveillance pathway
nnt04530  Tight junction
Brite
KEGG Orthology (KO) [BR:nnt00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104402218 (SYMPK)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    104402218 (SYMPK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nnt03021]
    104402218 (SYMPK)
   03019 Messenger RNA biogenesis [BR:nnt03019]
    104402218 (SYMPK)
Transcription machinery [BR:nnt03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     104402218 (SYMPK)
Messenger RNA biogenesis [BR:nnt03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     104402218 (SYMPK)
    U7-dependent histone pre-mRNA processing factors
     104402218 (SYMPK)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 104402218
NCBI-ProteinID: XP_010008373
LinkDB
Position
Unknown
AA seq 688 aa
FAANLPPTLAKSQVSSVRKNLKLHLLSILRHPSSGDFQPQITTLLVDLGTQQAEIARSMP
SPRDTRKRPRDEPDATLKKMKIGENPPEDDEDKDLEATPVAVPKASGQSGVPSDTDITAE
FLQPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTEVQIKHLSRLMATQMTAA
GLGPGVEQTKHLKEEPKEEKTSKPESVVIKRRLSALAQGQAISVLGAQGSATTLLEEEAP
QTKRRPEPIIPAPQPRLVGAGGRKKVFRLGDVLKPLSETQVEKLKLGAVKRILRAERAVA
CSGAAQARVKILASLVTHFEVPLKSEVLAFILEDVRARLDLAFAWLFQEYNSHLSRFPEG
NLERYDQCLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMS
TLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFALNYL
QLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIA
XXXXXXXXVLVLPXIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKR
VRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHSDGSSA
VSPLNPGELLIALHNIDSSKCDMKSIIK
NT seq 2065 nt   +upstreamnt  +downstreamnt
tttgcagccaacctgccccccaccttggccaagtcccaggtgagcagcgtgaggaagaac
ctgaagctgcatcttctgagcatcctgcggcacccgtcctcgggggacttccagccccag
atcaccaccctgctggtagacctgggcacccaacaggccgagatcgcccgcagcatgccc
agcccccgggacacccgcaagcggccccgcgacgagcccgacgccaccctcaagaagatg
aagataggtgagaacccccctgaggatgacgaggacaaggacctggaggcgacaccagtg
gcggtgcccaaagcctcgggccagagcggtgtcccctcggacacggacatcaccgctgag
ttcctgcagcccctgctcaccccggagaacgtggccaacctggtgcttatcagcatggtg
tacctgcccgaggccatgcccgcctccttccaggccacctacaccccggtggagtcagcg
ggcaccgaggtgcagatcaagcacctctccaggctcatggccacccagatgacagcagcg
gggctggggccaggcgtggagcagacgaagcacctgaaggaggaacccaaggaggagaag
acctccaaacccgagagcgtggtcatcaagcggcgcctctcggcgctggcccagggtcag
gccatctccgtgctgggtgcccagggctcggccaccaccctgctggaggaggaagcccct
cagaccaaacggcgcccggagcccatcatcccggcgccgcagccgcggctggtgggtgct
ggtggcaggaagaaggtgttccgcctgggtgatgtcctcaagcccctcagtgagactcag
gtggagaagctgaagctcggagctgtcaaacgcatcctccgggccgagcgcgccgtggcc
tgtagtggggctgcgcaggcccgggtgaagatcttggcctcgctggtgacccacttcgag
gtgcccctcaagagcgaggtcctggccttcatcctggaagacgtccgcgcccgcctggac
ctggccttcgcctggctcttccaggagtacaattcccacctcagccgcttcccggaggga
aacctggagcgctacgaccagtgtctcattgggctcctggccgggctgcaggagaaaccg
gaccagaaggatgggatcttcaccaaagtggtgctggaggcgccactcatcaccgagagc
gcgctggaggtgatccgcaagtactgcgaggatgagagccgcacctacctgggcatgtcc
acgctgcgggacctcatcttcaagaggccgtcccggcagttccagtatctccatgtcctg
ctggacctgagctcccacgagaaggacaaggtccgccagcaggccctgctcttcatcaag
cgcatgtacgagaaggaccagctccgggagtacgtggagaagtttgccctcaactacctg
cagctcctggtgcaccccaacccaccctctgtgctttttggggctgacaaggacacggag
gtggcggcaccatggacggaggagaccatcaagcagtgtctctacctgtacctggctctg
ctgccccacaaccacaagctcatccacgagttggcctctgtctacaccgaggccatcgct
nnnnnnnnnnnnnnnnnnnnnnacgtgctggttctcccctagatccgggggatggggatg
aactcgcctgagctgctgctgctggtggagaactgccccaaaggagccgagacgttggtg
acacgctgcctgcacagcctcaccgacaaagtgcccccctcgcctgagctggtcaagagg
gtccgggacctctatcacaagcggttgccggacgtgaggttcctcatcccggtcctcaat
gggctggagaagaaagaggtgatccaggcgctgcccaagctcatcaagctcaaccccatc
gtggtcaaggaggtcttcaaccgcctgctggggacacagcacagtgacggctcctcagcc
gtgtcccccctgaacccgggcgagctcctcatcgccctccacaacatcgactcctccaag
tgcgacatgaagtccatcatcaaag

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