Nestor notabilis (Kea): 104404106
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Entry
104404106 CDS
T08494
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nnt
Nestor notabilis (Kea)
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nnt03016
]
104404106 (RTCB)
Enzymes [BR:
nnt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104404106 (RTCB)
Transfer RNA biogenesis [BR:
nnt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104404106 (RTCB)
Prokaryotic type
tRNA splicing ligases
104404106 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104404106
NCBI-ProteinID:
XP_010010758
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
SSAEGQDYLKGMAAAGNYAXXXXXXXXXXXLSSMTFLTRQAFAKVFNTTPDDLDMHVIYD
VSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSY
VLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEE
APESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1370 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggctttttgcctgctatgaaacagattgggaatgtggctgcattacctggca
ttgttcatagatcaataggccttccagatgtccactctggctatgggtttgccattggca
atatggctgcctttgatatgaatgatcctgaagcagtagtctcaccaggtggtgtcggat
ttgatatcaactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagc
ctgtgaaggagcagcttgcccaggctatgtttgaccatattcctgttggtgttggctcca
aaggtgtcatccccatgaatgccaaggatttggaagaagcactagagatgggtgtggact
ggtctctccgggagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
ggatgctgcaggctgatcccaacaaggtctcctcaagagcaaagaagaggggcctacctc
agctggggaccctgggagctggaaatcattacgccgagatccaggttgtggatgacattt
acaatgaatatgctgccaggaagatgggcattgaccacaaagggcaggtgtgcgtgatga
tccacagtggcagcagaggtctgggccaccaggttgctacagatgcgttggtggcaatgg
aaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcctgtgccagga
tttcttcagcagaggggcaggattacttgaagggaatggcagctgctggaaactatgcgt
gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctctcttctatgacttttctaacaagac
aggcctttgccaaagtcttcaacacaaccccagatgaccttgatatgcatgtaatctatg
atgtgtctcacaacattgccaaagtggagcaacatgtagtggatggaaaggagcggactc
tgctggtgcacagaaagggatcaaccagggccttccctcctcatcatcctcttattgctg
ttgattatcaactgactggacaacctgttttgattggcgggactatgggcacctgtagct
atgttcttactggcacagagcaaggcatgactgagaccttcggaactacttgccatggag
ctggtcgtgcactgtctcgagccaagtctcgccgtaacttggacttccaggatgtattgg
acaagctggctgacatgggcattgccatccgtgttgcttctcccaaactggtcatggagg
aagcaccagagtcttacaagaatgtgacagatgtggttaacacctgccatgctgctggca
tcagcaaaaaagccattaaactgagacctattgctgttataaaaggttag
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