Nestor notabilis (Kea): 104406844
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Entry
104406844 CDS
T08494
Symbol
PNLDC1
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104406844 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnt03019
]
104406844 (PNLDC1)
Enzymes [BR:
nnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104406844 (PNLDC1)
Messenger RNA biogenesis [BR:
nnt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104406844 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104406844
NCBI-ProteinID:
XP_010014253
LinkDB
All DBs
Position
Unknown
AA seq
511 aa
AA seq
DB search
MEFTGLYSISLPNDXXSLFDSPAERYLKARQSVQHFTVTQLGLAIFSNESSNKYVVHSYN
FFLFPXXXXXXXXXXGFTDVEFALSASSIQFLSHYGFDYNKFLKDGIPYMNEAQEKILHQ
RLLEGSRKVSSALDRDVLKKAIDEVTCWVAAAEEEETMILQDLSGYQMLEVQLVLRQALQ
NVWTQPLGIKKVMVKKVSPQRRHLLENSPYDWCQKELILLSARGFTNLFQILVQAKKPLV
GHNMLMDLMHLHDKFYKPLPESYEEFKKNIHNLFPVLIDTKIVTKSIQRKCPFPRGSNLL
EVYAALCSSNLNPKDSTCPEIALASDCSRYAEKKSPHEAGYDAFLCGSVLLKSAHLLLCR
STDDAVEADPSCPQYLAVLAEYLNKVNFIRGGVSSINFSGEDTPCHHPPLLVVHVRGSLG
LNERQIYQEFKALCSFDVRRLSKNQFLLLSNKFKQVRLVLRDYKHHPHLRISVYRHWRHS
PGVSCLLQVSGVVALWSLLAFVLGGAPRCLF
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggcttatattcgatttccctaccaaatgacnnnngcagcctgtttgat
tcccctgcggagcggtacctgaaggccaggcagagtgtgcagcacttcactgttacgcag
cttgggctggcaatattctcaaatgaaagttcaaacaagtatgtggtacattcatacaac
ttttttctctttccnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggggtttacggatgtc
gaatttgccctctctgcatctagcattcagttcctgtctcattatggctttgactataat
aagttccttaaagatggaatcccatacatgaatgaggcacaagagaagatccttcaccag
cgtctcttagagggtagcaggaaagtgagcagtgctctggacagggatgtgctgaagaaa
gctattgatgaagtgacgtgttgggtagctgcagcagaggaagaagagactatgattctg
caggatctgagtggctatcagatgcttgaagttcagttggttctgagacaggctctccaa
aatgtttggacgcagcctcttggaatcaagaaggtaatggtgaaaaaagtgagtccacag
cgtcgtcaccttctggagaactctccttatgactggtgccagaaggagctcattctcctg
tctgctcggggcttcaccaaccttttccagatacttgttcaagccaagaagcctctggtg
ggacacaacatgctcatggaccttatgcatcttcatgacaagttctacaagccccttcca
gaaagctatgaggagtttaaaaagaacattcacaacctgtttcctgtcctcatagacacc
aagattgtaacgaaatccatacagaggaaatgtccatttcctcggggatctaatcttctg
gaggtgtatgcagctttgtgcagcagcaacctaaatcccaaggattcaacatgccctgag
atagctcttgcaagtgactgctcaagatacgctgagaagaaatctcctcacgaggcaggc
tatgacgcgtttctctgtggttcagttcttctgaagtcagcccatttgctgctgtgcaga
tccacagacgatgcagtggaggctgatccctcttgccctcagtatctcgctgtgttagca
gagtatctgaacaaagtgaatttcatccgaggtggtgtttcaagcattaatttttctggg
gaagacactccctgccaccatccccctctcctggtcgtccatgtccgaggctcactgggg
ctgaatgaaaggcagatttaccaggagttcaaagctctttgtagctttgatgtcaggcgg
ctttcaaagaaccagttccttctgctctccaataaatttaagcaagtcaggcttgttctg
cgagattataaacatcatccccacctgcggatttccgtctatcgccactggaggcactct
ccgggcgtgagctgcctgctgcaagtctctggtgttgtggcactgtggtcactcttggcc
tttgtacttggaggagctcctcgctgcttgttctaa
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