Nestor notabilis (Kea): 104407937
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Entry
104407937 CDS
T08494
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03013
Nucleocytoplasmic transport
nnt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104407937 (UPF1)
03015 mRNA surveillance pathway
104407937 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnt03019
]
104407937 (UPF1)
Enzymes [BR:
nnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104407937 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104407937 (UPF1)
Messenger RNA biogenesis [BR:
nnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104407937 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104407937 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104407937
NCBI-ProteinID:
XP_010015653
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gtgaatggacctgatggcattcttcagaatggagctgtggatgataatgtggctaaaact
agccagcttctggcagagttgaattttgaagaagatgaagaagatacttattacacaaag
gaccttcctgtgcatgcttgcagttactgtggcatccatgaccctgcttgcgtggtttac
tgcaacaccagcaaaaagtggttctgtaatgggcgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcgaagtgcaaggaggtgactctccataaggatgggcctcta
ggagagactgtcttggaatgttacaactgcggatgtcgtaatgtgtttctcctgggcttt
attccagctaaggcagactccgtggtggttttactgtgcaggcagccatgtgccagccag
agcagtttaaaggatattaactgggacagttcacagtggcagcctcttatccaagatcgt
tgtttcctttcatggctggtgaagattccatctgaacaggagcagttgagagcccgtcag
attacagctcaacagattaacaaactggaagaactttggaaggaaaatccatctgcaacc
cttgaggacttggaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatctttggtcctctggtcaagcttgaggcagactat
gacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcctatttcactttgccaaagactgattcggatatgcgtctt
atgcaaggagatgagatctgcctgaggtataaaggagacctggcccctttgtggaaagga
attggtcatgttatcaaagtccctgataattatggtgatgagattgccatcgagctgagg
agcagcgtgggagcgcccgtggaagtcactcataacttccaagtggattttgtgtggaag
tcgacttcatttgacagaatgcagagtgctttaaaaacattcgctgtggatgagacctca
gtgtctgggtacatctatcacaagctgttaggtcatgaggtggaagatgtaattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtcctcctggtacc
ggaaaaacagtgacatcagccacgattgtctatcatctggctagacagggcaacgggcct
gtattagtctgtgctccaagtaacatcgctgtggatcagttgactgagaagatccatcaa
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcccgtg
tccttcttggcattgcataaccagatcaggaacatggatagcatgccagagcttcagaaa
ctgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgg
gctctgaaacgaacagcagagcgggagttacttatgaatgcagatgtgatctgttgcaca
tgtgtgggagctggtgacccaaggcttgcgaagatgcaattccgctccattctgatcgat
gaaagcacacaggccactgagccagagtgcatggtgccagtggtgctgggagcaaagcag
cttattctcgtgggtgaccactgccagcttggtcctgttgtgatgtgtaagaaagctgct
aaggctgggctgtctcagagcctcttcgagaggctggtggtgctgggtatccggccgatc
cgcctgcaggtgcagtaccgcatgcatcctgcccttagtgctttcccatccaacatcttc
tatgagggttcactccagaacggtgtcactgcagcggaccgtgtgaagaaagggtttgat
ttccagtggccacagccagataagcctatgtttttctacgttacacaaggacaggaagaa
attgccagctcaggcacctcttacttaaacaggacggaagctgccaacgtggagaagata
actacaaagctgttgaaagctggtgccaaaccagatcagattggcatcattactccttac
gaagggcagcgatcctacctggtgcagtacatgcagttcagtggctccctgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccaggggcgagagaaggacttt
attatcctttcttgtgtgagggccaatgaacaccaagggatagggtttctgaatgacccc
aggcgtcttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaaccca
aaagctctgtctaaacaaccactctggaaccacctgctgaattactacaaggagcagaag
gtgctggtggagggaccactgaacaacctccgggaaagccttatgcagttcagcaagccc
cggaagctcgtcaacaccatcaacccaggtgcccgtttcatgactactgccatgtatgat
gcacgggaggccattattccaggatctgtctatgaccggagcagtcaaggccgcccatcc
aacatgtacttccagacccatgaccagatcgggatgatcagcgccggccccagccacgtc
actgccatgaacattcccatccccttcaacctggtgatgccgccgatgccgccgccgggg
tacttcggccaagcgaacggaccagccgcagggcgcggggcaccgaaagggaagactggt
cgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttcca
aatagtcaagcgagccaagacgtggtgtcccagcccttctcccagggtccactgactcag
gggtatatctccatgagtcagccatcgcagatgagtcagcctgggctctcccaacccgaa
ttatcacaggacagttaccttggtgatgagtttaagtctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
