Nestor notabilis (Kea): 104408444
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Entry
104408444 CDS
T08494
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104408444 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnt03019
]
104408444 (SKIV2L2)
03041 Spliceosome [BR:
nnt03041
]
104408444 (SKIV2L2)
03009 Ribosome biogenesis [BR:
nnt03009
]
104408444 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
nnt03016
]
104408444 (SKIV2L2)
Enzymes [BR:
nnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104408444 (SKIV2L2)
Messenger RNA biogenesis [BR:
nnt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104408444 (SKIV2L2)
Spliceosome [BR:
nnt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104408444 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104408444 (SKIV2L2)
Ribosome biogenesis [BR:
nnt03009
]
Eukaryotic type
Pre-60S particles
Helicases
104408444 (SKIV2L2)
Transfer RNA biogenesis [BR:
nnt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104408444 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
104408444
NCBI-ProteinID:
XP_010016355
LinkDB
All DBs
Position
Unknown
AA seq
1002 aa
AA seq
DB search
MAGCALNRKRSEAKSSAVATAKPKRKAEVNHTENAVLGKKPKLEDGLEDVNLADVMPRVK
VQAVETVEGCTHEVALPANEEFTGLKPRTGKAAKEYPFILDAFQREAILCVDNKQSVLVS
AHTSAGKTVCAEYAIALALRDKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP
TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV
FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE
DNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCE
AYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLL
PILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQM
SGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEIN
PEYMLEKSFYQFQHYRTIPEIVERVNKLEGLYNKIVIPNEENVVIYYKIRQQLAKMSREI
EEYVHKPKYCLPFLQPGRLVKVKNEDDDFGWGVVVNFSKKSNVKPNSGELDSLYVVEVLL
YCSKDSLKNSATESAKPVSLDQKGEMQVVPILVHLVAAISSVRLYIPKDLRPVDNRQSVL
KSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKIIQKVEAFEHRMYSHPLHNDPNLETIYK
LCEKKAQIAVDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEI
SSADELLLTEMMFNGIFNDLTPEQTAALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAK
RIAKVSAEAKLEIDEENYLNSFRPNLMDVVHTWANGANFAHICKMTDVFEGSIIRCMRRL
EELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggccggttgtgccctgaatcgaaaacgatcagaagcaaaatcctcagcagttgcaaca
gcaaagccaaaaaggaaagctgaggtcaatcataccgaaaatgctgttttgggaaagaag
ccaaaattggaagatggattagaagatgtcaatctggcagacgtgatgcctcgggtaaag
gtacaagctgtggaaactgttgaaggttgtacgcatgaggttgcacttccagcaaatgaa
gagttcacaggtctgaagccaagaactgggaaagctgctaaagaatatccatttattctt
gatgcttttcagagggaagctattctttgtgtggataataagcagtctgtgttagtgtca
gctcatacatcagctggtaaaactgtttgtgcagagtatgcaattgccctggctttgagg
gataaacagcgtgtaatatttacaagcccgattaaagctttgagtaatcagaagtaccgt
gagatgtatgaagaatttcaggatgttggtttgatgactggggatgtcaccattaatcct
acagcttcttgtctggtaatgacaactgagattttgagaagcatgctctacagaggttct
gaggttatgcgggaagttgcatgggttatttttgatgaaatccactacatgagagattcg
gaacgtggtgttgtttgggaagagacaattattttgcttcctgacaatgttcattatgtc
ttcctttctgcaactattccaaatgctcgccagtttgctgagtggatctgccatcttcac
aaacagccctgccatgtgatttacactgactatcggcccactccactgcaacattatata
ttcccagcaggaggagatggactccatctggtggttgatgaaaatggagatttcagagaa
gataattttaatacagcaatgcaagtgcttagagatgcaggtgacttagcaaaaggagac
cagaaaggcaggaaaggaggaacgaaaggtccttcaaatgtttttaagattgtgaagatg
attatggaaaggaatttccaaccagtgattattttcagcttcagtaagaaagactgtgaa
gcctatgcacttcagatgacaaagttagatttcaatacagatgaagaaaaaaagatggtt
gaagaagtgttcaataatgcgattgattgtctatcagatgaagacaaaaagcttcctcag
gttgagcatgtacttccacttctgaagcgaggaattggtatccatcatggcggtcttctt
cctattttaaaagaaaccatagaaattcttttctctgagggcctaataaaggccttattt
gccacagagacttttgctatggggattaatatgccagccaggactgtgctatttacgagc
gccagcaaatttgatggaaaagatttccgatggatatcctcaggtgaatacattcaaatg
tcaggtcgtgcaggacgccgaggtatggatgacagaggaatagtaattcttatggtggat
gaaaaaatgagtccaacaattggcaagcagctcttgaagggttcagctgatcctttaaac
agtgcattccacctgacgtataacatggtattgaacttgcttcgagtagaggaaattaac
cccgaatacatgttagaaaaatccttctaccagttccaacattacagaactattccagaa
atagtagaaagagtgaataagttggaaggactatacaacaaaatagtcattcccaatgaa
gaaaatgtggtcatatactacaaaatccgacagcagcttgcaaaaatgagtagagagatt
gaagaatatgttcacaaaccaaagtactgcctgccgtttctacagccaggaagactggta
aaggtgaagaacgaagatgatgactttggatggggagtggtcgttaatttctctaagaaa
tcaaatgttaagccaaattctggtgaattggactcgttatatgtagttgaagtgctactg
tactgcagcaaagacagtttgaaaaattctgctactgagtccgcaaagccagtcagtctt
gatcagaaaggagagatgcaggttgttcctattttggtacatcttgtcgcagctatcagc
agtgtccgactttacataccgaaagacctgcggcctgttgacaacagacaaagtgtgcta
aaatctatacaagaagtacagaagcgatttcccgatggagtaccattactagaccctatt
gatgacatgggcatcaaagatcaaggactgaaaaaaataatccaaaaagtagaggcattt
gagcataggatgtattcacatcctcttcacaatgatcccaacttggaaaccatatacaaa
ctttgtgaaaaaaaagcacagattgctgtagatatcaaagcagcaaagcgagagctgaaa
aaagctagaactgtcttacaaatggatgaactcaaatgccggaagcgagttttgagaaga
ctggggtttgccacgtcttcagatgttattgagatgaaggggcgggttgcttgtgaaatc
agcagtgctgatgaactgctcctgacagaaatgatgttcaatggtatcttcaatgactta
actccagaacagacagctgcactactaagctgtttcgtatttcaagagaattccagtgag
atgccaaaattgacagagcagttggcaggaccacttcggcaaatgcaggagtgtgcaaaa
agaattgccaaggtgtcagcagaagcaaaactggaaattgatgaagaaaattacttgaat
tccttcagacccaacctcatggatgttgtccatacatgggcaaatggtgctaactttgct
cacatctgcaaaatgactgatgtctttgaaggtagcataattcgttgcatgagaaggttg
gaagaattgcttcggcagatgtgccaagctgcaaaagccatcggaaacacagagctggag
aacaagtttgcagaggggattacaaaaatcaagagagatattgtctttgctgcaagcctt
tacctgtaa
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