Nestor notabilis (Kea): 104409682
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Entry
104409682 CDS
T08494
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104409682 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nnt03041
]
104409682 (DHX38)
Enzymes [BR:
nnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104409682 (DHX38)
Spliceosome [BR:
nnt03041
]
Complex C
Other components
Step II factors
104409682 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
AAA_30
AAA_16
AAA_7
SLFN-g3_helicase
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
104409682
NCBI-ProteinID:
XP_010017921
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MGIKKEDEKDEMATEDGKVDYKTEQKFAEHMKEKTQASSEFAKKKSILEQRQYLPIFAVQ
QELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVS
EEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDNYSAIIMDEAHERS
LNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKT
PQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPI
YSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMD
ALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLL
KSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKM
LIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQW
KNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYF
HQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDG
EWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQERRNPLGS
ARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaagaaggaagacgagaaggatgagatggcgacagaagatggcaaagtggat
tacaagactgagcagaagtttgctgaacacatgaaagaaaaaactcaagccagcagcgag
tttgccaagaagaaatcaatcctggagcagagacagtatctgcccatctttgcagtacag
caggagctgctctccatcctcagagacaacagcatcgtgattgtggtgggggagacgggg
agcgggaagacgacgcagctgacgcagtacctgcacgaggatggctacaccgactacggc
atgatcggctgcacgcagccccgcagggtggcagccatgtctgtcgcaaagcgggtcagt
gaggagatgggcgtgcgcctcggggaggaggtgggctacgccatccgctttgaggactgc
acctctgagaacacagtgatcaaatatatgacagatgggatccttcttcgtgagtcactg
cgagaggctgacctggacaactacagtgctatcatcatggatgaggcacatgagcgctca
ctcaatactgacgtgctctttggcttgcttcgagaggtggtggcccgacgctcggatctg
aagcttgttgtcacctcggccaccatggatgcagataagtttgcctccttctttgggaac
gttcccattttccacattcctgggcgcaccttccctgttgatattcttttcagcaagacc
ccacaagaggattacgtggaggctgcagtgaaacaagccctgcaggtccatttgtctggt
gctcctggagacatcctcgtcttcatgcctggccaggaggacatagaggtgacctcagag
caaattgtggagcaccttgaagagctggagaaggcgcctgctcttgctgttctgcctatc
tattctcagctaccgtcggacttgcaggccaagattttccagaaggctccagatggggtc
aggaagtgcattgttgccactaacattgcagagacctcactgacagtggacggcatcatg
tttgtgattgactctggctactgcaagttgaaggttttcaacccccgtataggcatggat
gcactgcagatctaccccatcagtcaagccaatgccaaccagagggcaggccgagctggc
cgaacaggcccaggccactgcttcaggctctacacccagagtgcctacaagaatgagctg
ctgacaaccacagtgcctgagatccagcgcaccaacctggccaatgtggtgcttttgctc
aagtccctgggtgtgcaggacctgctgcagttccacttcatggatccaccccctgaggac
aacatgctgaactccatgtaccagctgtggatcctaggagccctggataacaccggtggt
ctgacctcaacaggacgtctcatggtggagttcccactggatcctgcactctccaaaatg
ctcattgtctcttgtgacatgggttgcagctctgagatcttgctcattgtctccatgttg
tctgtacctgccatcttttatcggcctaagggccgagaggaggaaagtgaccaagtgcgg
gagaaatttgctgttcccgagagtgatcacttgacttatctgaatgtttacctgcagtgg
aagaacaacagctattccacactgtggtgcaaccagcacttcatccatgccaaggccatg
cggaaggtgcgggaggtgcgagcccagctcaaggacatcatggtgcagcagcggatgagc
ctggcatcctgtggtactgactgggatgttgtcaggaagtgcatctgtgctgcgtatttc
catcaagctgcaaagctgaagggcattggggagtatgtgaacatccgtacaggcatgccc
tgccacctgcaccccacaagctctctgtttgggatgggctacacaccagactacatcgtg
tatcatgaattggtcatgaccaccaaggaatacatgcagtgtgtcactgctgtggatgga
gagtggctggcagagctgggccccatgttctacagtatcaagcatgctggcaagtcacgc
caggagaaccgccgccgtgccaaggaggaagtgtctgccatggaggaggagatggcgctg
gccgaggagcagctgcgtgcccgccgggaggaacaggagcgccgcaaccccctgggaagt
gccagatctactaaaatctacacccctgggcggaaggagcagggcgagcccctgacacca
cgacgcaccccagcacgctttggtctctaa
DBGET
integrated database retrieval system
