Nelumbo nucifera (sacred lotus): 104586525
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Entry
104586525 CDS
T04131
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104586525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104586525
03012 Translation factors [BR:
nnu03012
]
104586525
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104586525
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104586525
Translation factors [BR:
nnu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104586525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
ATPase
nSTAND3
Ank_2
AAA_22
Ank_5
ResIII
AAA_23
Ank
Ank_3
Ribosomal_L27_C
AAA_16
AAA_7
NPHP3_N
DUF7779
ABC_tran
AAA_11
Motif
Other DBs
NCBI-GeneID:
104586525
NCBI-ProteinID:
XP_010242091
UniProt:
A0A822ZFD9
A0A1U7YW05
LinkDB
All DBs
Position
Un
AA seq
1242 aa
AA seq
DB search
MTRSGKKGKNRNDREQQNPTVTEVTRIRIAKVLGEFRMGTAEVYTFEAGLTNPERAVVHE
LCRKMGMVSKSSGRGKQRCVTVYKSKKKKGNGMNGEEILTCLTFSEESKIVLQDLFTRYP
PDDGENKELENHTARTGIIQGKSDDSFCKPSMGKVEITKKLEALASRINKDANLRQITED
RFKLPIASFRDAITSSVDSQQVVLISGETGCGKTTQVPQFLLDHMWRKGEACKIVCTQPR
RISATSVAERISSERGEKVGETVGYKIRLETKGGKHSSIMFCTNGVLLKVLVGKRAVSSK
TQPSNRFLKGDNFEVTHIIVDEIHERDRFSDFILAILRDMLPLYPHLHLILMSATLDAER
FSQYFGGCPVIRVPGFTYPVKIFYLEDVLSILKSSDDNHLDSALLADTVEDDELTEDCRV
SMDEAIDLAWSSDEFEPLLELISSNTTPRIFNYQHSLTGASPLMVFAGKGRVGVVCMLLS
FGADCHLRAKDGTNALEWAQRENQGEVADTIKQHMENALSKSEEEQQLLDKYLATVNPEH
IDTVLIEKLLKKICNDSKEGAILVFLPGWDDINKARERLLASSFFKDSSKFVIISLHSMV
PSVEQKKVFRAPPPGSRKIILSTNIAETAVTIEDVVYVIDSGRMKEKSYDPYNNVSTLQS
SWISKASAKQREGRAGRCQPGICYHLYSKTRSMSLPNFQVPEIKRMPIEELCLQVKLLDP
NCKIVDFLQKTLDPPVSESIRNAIIVLQDIGALSQNEDLTELGEKLGLLPVHPSTSKMLF
FSILMNCLDPALTLACASDYRDPFILPMVPDERKKAAAAKSELASLYGGYSDQLIVIAAF
ECWQRAKYRGQEARFCSQYFVSSNTMNMLSCLRMQLQNELIRSGLIPEDVSSCSLNARDP
GILHSVLVAGLYPMVGRLLPYKSGKPFVETASGAKVRLHHQSSIMKLAKTKSKTHQLVVY
DEITRGDGGMHIRNCTIVGPYPLLLIATEMVVAPPKGHEEDSDEDVSAFGSDEDEMEMHI
GSSEQRGERIMSSPDNTVSVVVDRWLEFESTALDVAQIYCLRERLSAAILFKVKHPCEVL
PPALGASIYAIACILSYDGLSGISLPLESVDSLTSMVNAAGINNSAAGEDSKSALSGGRR
VVGQNISNSNNYLRQLMNDDIGYDVRHNSPSRYHKSRKPVSNGGHLSGSSAQIRSPSLPF
VPIHGSQRPPQVQGLSGHGSGRQGSSGPRSGSYKRHRGSGTR
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgacgagatcaggaaagaaaggcaagaacagaaatgacagggagcaacaaaaccctacc
gtcacagaagtcacccgaattcgaatagccaaagtactgggggagtttcgtatgggaacc
gctgaagtgtacacatttgaagctggcttgacaaatcctgaacgggcggtggtgcatgaa
ttatgcaggaagatgggtatggtgtcaaaaagttctgggcgtggcaaacagcgatgtgtt
actgtttacaaaagcaagaagaagaaggggaacggcatgaatggggaggaaattcttact
tgtttgacattttcagaagagtcaaaaatagttttacaggacttatttacacggtatcct
cccgatgatggagagaataaagaacttgagaaccatactgcaaggactggaattatacag
gggaagagtgatgatagtttttgcaaaccatcaatgggcaaggttgaaattacaaagaag
ttggaggcacttgcttctagaataaataaggatgcaaacttgagacagattactgaagac
aggttcaagcttccaattgcatcgttcagggatgctattacatcttcagtggattctcag
caggttgtgctcatttctggtgagactggatgtgggaaaaccacacaggttccacaattt
cttttggatcatatgtggagaaagggtgaggcatgtaaaattgtgtgtacgcaacctcga
cgtatatcagcaacatcagttgctgagagaatatcttctgaaaggggtgaaaaagttgga
gagacagttggatacaagatacgactggagactaagggtgggaagcattcatccattatg
ttttgcacaaatggggttcttctgaaggtgctggttggaaaaagagctgtttcttcaaag
acacagccttcaaatagattcttgaaaggagataattttgaagtaacacacatcattgtg
gatgaaattcatgaaagggatcggttctctgacttcatcttagcaattctcagagacatg
ctcccactatatcctcatctacatctgatacttatgagtgctactcttgatgctgaacgt
ttttcacaatattttggtggttgtccggtcatcagggttcctggattcacttatcctgtc
aagattttctacctggaggatgtgctttctatcctgaaatcatctgatgataaccatctt
gattctgctttattagctgatacagttgaagacgatgagttaacagaggattgtagagtt
tccatggatgaagctattgacttggcctggtcaagtgatgagtttgaaccccttctagaa
ctaatttcctctaacacaacaccaagaatttttaattaccagcattctctgactggagca
tcaccattgatggtttttgctggtaaaggtagagttggtgttgtttgcatgctcctctca
ttcggtgcggactgccatctacgtgccaaggatgggacaaatgcattagagtgggcacaa
cgagaaaatcaaggcgaggttgctgataccatcaaacaacacatggagaatgccctttcc
aagtctgaagaagaacaacagctacttgacaaatatctggcaactgtcaatcctgaacat
attgatactgttcttatagagaagttgttaaagaagatatgtaatgattcaaaagaagga
gctattcttgtatttcttccagggtgggatgatataaataaggcacgggaaagattgcta
gcttcctcatttttcaaggattcctcaaaatttgtgatcatatctcttcattctatggtt
ccatctgtggagcagaagaaggtttttagagcaccacctcccggtagtcgtaagattatt
ctttctactaatatagcagagactgctgttacaatagaggatgttgtttatgttattgac
agtggacggatgaaagaaaaaagttatgatccttataataatgtttctacactccagtca
tcttggatttcaaaagctagtgcaaagcaacgagaaggacgtgctggtcgctgccaacct
ggaatctgttaccatctttattcaaagactcgaagtatgtctctgccaaattttcaagtt
cctgaaatcaagcggatgccaattgaggaattgtgcttacaggtgaagttgcttgatcca
aattgcaaaatagtagatttcttgcagaagacattggatcctccagtttctgaaagcata
cgcaatgccatcattgttcttcaggatatcggcgctctatcacagaatgaggatcttaca
gaactgggggagaaacttggtctgctaccagtgcacccgtcaacaagcaagatgcttttc
ttttccatattgatgaactgtcttgatccagctttgactctagcatgtgcatcggactat
agagatccttttattcttcccatggtgccagatgaaaggaagaaggctgcagctgcaaaa
tctgagcttgcctcattatatggtgggtacagtgatcagctaattgtcattgcagcattt
gagtgctggcaacgtgcaaagtataggggtcaagaggcacggttttgttctcagtatttt
gtctcctcaaacactatgaatatgttatcatgtctgcgtatgcagcttcaaaatgaacta
atacggagtgggcttatcccagaagatgtgtcaagttgtagcttaaatgcacgggaccca
ggcatacttcattcagtccttgttgctggtttatatccaatggttggaagattgcttcca
tataaaagtgggaaaccatttgtggaaactgctagtggtgctaaagttcgattgcaccat
caatcctcaattatgaaactagcaaaaactaaatctaaaacacatcagctggttgtatat
gatgagataacccgtggtgatggaggtatgcatataaggaactgtaccattgtgggacca
taccctttactgttaattgctacagaaatggttgttgctcctccaaagggccatgaggag
gacagcgacgaagatgtgtctgcatttgggagtgatgaggatgaaatggagatgcatatt
ggttcttctgaacaacgaggagagcgaataatgtcctcccctgataataccgtttctgtt
gttgttgatcggtggctcgagtttgagtcaacagcacttgatgttgctcaaatttactgt
ttgagagaaagattgtctgcagcaatcctgttcaaagtaaaacatccatgtgaagttcta
cctccagctcttggagcatcaatatatgcaattgcctgcattttgtcttatgacgggtta
tctgggatctccctacccttggaatctgttgattcattgacatcaatggtcaatgctgca
gggatcaacaattcagcagccggtgaagattccaaatcagcattgtcaggggggaggaga
gtagttgggcaaaacattagcaattcaaataattatctgaggcagctgatgaatgatgac
ataggttacgatgtacgccataattctccttcacgttatcacaaatcaagaaaaccagta
tccaatggtggacatttgagtggctcctcagcccaaatcaggtcaccatcattgccattt
gtacccatacatgggagtcagagaccaccacaagttcaaggtctgagtggacatgggtca
ggcaggcaaggatcatctggcccaagaagtggatcatataaacgacatcgtggcagtggg
acccggtaa
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integrated database retrieval system
