Nelumbo nucifera (sacred lotus): 104586614
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Entry
104586614 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104586614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nnu03041
]
104586614
03009 Ribosome biogenesis [BR:
nnu03009
]
104586614
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104586614
Spliceosome [BR:
nnu03041
]
Complex A
U1 snRNP components
U1 related factors
104586614
Complex B
104586614
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
Pre-60S particles
Helicases
104586614
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104586614
NCBI-ProteinID:
XP_010242202
UniProt:
A0A1U7YSY5
LinkDB
All DBs
Position
Un
AA seq
512 aa
AA seq
DB search
MSRYDNRTGDPGSYRDRRSDSGFGSGGGGSGAASYGISGRSSSSSRREYDGGGSPKNHDL
DGLPHFEKNFYIESPSVAAMTESEVEEYRQRRQITVEGRDVPNPVREFREAGFPEYVMQE
LIKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP
IVLVLAPTRELAVQIQQESAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRL
IDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPKEVEQ
LARSFLYNPYKVVIGSEDLTANRAIRQIVEIVSENQKYSKLVKLLEDIMDGSRILIFMDT
KKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV
KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE
LAAMGRRAPPPPPGHGGFRDRGRGFGGGRPWS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacaaccggaccggcgacccgggttcgtaccgtgatcggagaagcgat
tcgggtttcggaagcggtggaggtggcagcggagctgcgagttacggaatcagcggtcgt
tcatcatcgtcgagcaggagagaatacgacggcggcggttccccaaagaatcacgacttg
gatgggttgccccatttcgaaaaaaacttttatatcgagtctccttctgtggcggcgatg
accgagagtgaagtcgaggaataccgccagcggagacagattaccgttgagggtcgagac
gttcccaacccagtacgggaatttcgcgaggctgggttcccagagtatgtcatgcaagaa
cttattaaggctggctttgttgaacctactcccattcaatcccaaggatggcctatggct
ttaaagggtcgtgatctcattggtattgcagaaacaggatcgggaaagacgcttgcctat
ttactacctgctattgttcatgtcaatgcccagccatttctagcccctggagatggacca
attgtcttagttttagctccgacacgtgaacttgctgtgcaaatacaacaagaatccgct
aagtttggggcgtcatcaaggattaagaatacctgtatatatggtggagttccaaaggga
cctcaagttcgtgatcttcaaaaaggtgttgaaattgttattgccacacctggaaggctc
attgatatgttagagtcccatcatacaaacttgcgaagggtcacttaccttgttttggat
gaggcagatcgtatgttagacatgggttttgagcctcagattagaaaaatcatttctcag
attcgcccagatcgccaaactttgtactggagtgctacttggcctaaggaggttgaacaa
cttgccaggtcattcctttacaatccatataaggtggttattggttctgaagatctgaca
gctaatcgtgcaattcgccagattgtggagattgtctcagagaatcagaaatatagcaaa
ttggtgaagctgctggaggatatcatggatggaagccgaattcttatattcatggatacc
aagaaagggtgtgaccagaccacaagacagcttcgtatggatggttggcctgccctgtca
atccatggagataaaagtcaggcagagagagattgggtcctctcagaattcaaggctgga
aagagtccaattatgactgcgacagatgttgcagctcgtggtttggatgtgaaggatgtg
aagtatgtgataaattatgattttccgggatccttggaggattacgtccaccgcatcggt
cgaacaggcagggctggggccaaaggaacagcgtatactttcttcacagctgcaaatgcc
agatttgcaaaggaacttattaccatccttgaagaagctggacaaaaagttagtcctgaa
ctggctgcaatggggcgtcgtgcacctcctcctcctccaggtcatggtggcttccgtgat
cgtgggaggggctttggtggtggtcgaccatggagctaa
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