Nelumbo nucifera (sacred lotus): 104586732
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Entry
104586732 CDS
T04131
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104586732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104586732
Enzymes [BR:
nnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104586732
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104586732
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
ATP_bind_1
FtsK_SpoIIIE
ABC_tran
AAA_29
AAA_24
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
104586732
NCBI-ProteinID:
XP_010242350
UniProt:
A0A1U7YWK9
LinkDB
All DBs
Position
Un
AA seq
444 aa
AA seq
DB search
MAYSGMAGAPGLVGMSTPATSTTTRQVKLDKESELRIEVGMEIPLRLRLLTGTAEIFGTE
LPPEIWLSFPPRHKFAVFTWYGATIEMDGITETDYTADETPMVSYVNVHAVLEGRRNHAK
ASSSTDPDSSQGPRVIVVGPTDSGKSTLSKMLLSWAAKQGWKPTFVDLDIGQGSITIPGC
IAATPIEMPIDPVEGIPLEMPLVYFFGHTTPSLNVDLYKVLVKELSQILERQFAGNAESR
AAGMVINTMGWIEGVGYELLLHAIDTLNANVVLVLGQEKLCSMLKDVLKNKPNVDVVKLQ
KSGGVVSRNTKFRQKTRSYRIREYFYGLANDLSPHSNIANFSDLFVYKIGGGPQAPRSAL
PIGAEPAADPTRLVLVNINRDLLHLVLAVSFAKEPDQIISSNVAGFIYITDIDIQRKKIT
YLAPSAGELPSRFLIVGSLTWLET
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcaggtatggccggtgcaccaggactagtagggatgtcgacgccggcaacg
tcaacaacaaccaggcaggtgaagctggacaaagagagcgaacttaggatcgaagtcggt
atggaaattcctctccgcctccgcctcctcactggcactgctgaaatttttggcactgaa
cttcctcctgaaatttggctctctttccctccaagacacaagttcgcggtttttacttgg
tatggtgccacaatcgaaatggacgggattactgaaactgattacactgcagatgagaca
cctatggtgagctatgtaaatgttcatgctgtactggaggggagaagaaatcatgctaaa
gcatcttcatccaccgatcctgattcttctcagggccccagggtgatagttgtaggacct
acagattctggaaagagtacattgtcaaagatgcttcttagctgggcagctaagcagggt
tggaaacctacttttgtggatttagatattggtcagggatctataaccattcctggttgt
attgctgcaactccaattgaaatgccaatagatccagtagaaggaattcctcttgaaatg
ccccttgtttactttttcgggcacacaacacccagtttaaatgtagatttgtacaaagtg
cttgtcaaggagctttctcagatcctagagagacaatttgctggcaatgctgaatctcga
gctgcaggcatggtgataaataccatgggatggatagaaggtgttggttatgagttgctt
cttcatgcgattgatacattaaatgccaatgtagttttggttttgggtcaggaaaaactt
tgcagcatgcttaaagacgtacttaaaaacaagcctaatgtggatgttgtgaagcttcaa
aagtcaggtggtgttgtgtccaggaatacaaagtttcgtcagaagaccaggagctacagg
ataagggaatatttttatggccttgcaaatgatctttccccacattcaaacattgcaaat
ttcagtgatttgtttgtctataagattggtggtgggccccaggcaccacgttcagctctt
ccaattggtgcagagcctgcagcagaccctacacgattagttttggtgaatatcaaccgt
gacctgctacatttagttcttgctgtctcatttgccaaagaacctgatcaaataatctcc
agtaatgttgctggctttatctatatcacagatattgacatccagaggaaaaaaattacg
taccttgcaccatctgctggggaactaccgagtagattcttgatagttggtagtttgaca
tggctggagacctaa
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