Nelumbo nucifera (sacred lotus): 104587863
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Entry
104587863 CDS
T04131
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104587863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104587863
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104587863
mRNA degradation factors
5'-3' decay
Decapping complex
104587863
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIA
HTH_ParB_Mtase
Motif
Other DBs
NCBI-GeneID:
104587863
NCBI-ProteinID:
XP_010243918
UniProt:
A0A1U7Z9V6
LinkDB
All DBs
Position
Un
AA seq
825 aa
AA seq
DB search
MDGFDDEGGIEKIPNQKAFKGLAESSSEDARFDASQYAFFDKDVMEEVELGGLEDEDDDV
PLIGFDDDEYPLSDREELRGENLGSLSDIDDLVSTFSKLNKAVSEPRTAGVIGDRGSFSR
ESSSTTEWAQESDFPNWLDPHIFDSENVREGKRWSSQPHPSARLGDSKPLYRTSSYPQQP
QQQQHFSEPVLIPKSSFTSYPPPGGRSQASNQHSHQLNMPSLGGSPLPFSSPNLSPFSNS
QLHLQGLSHGLHYGGNLTQFASQGLSMNNRPQGHWGNQANLFSGDHSNLLNNLLQQQLPH
PSGLVPQQLMSQQQQQQQQRLHHPVQPSLAHFSALQSQLFGSHSSPSPHVISKYESMLGM
AELRDQRTKATQRGRQNLRYSQQGSDTSSQKSDNGWPQFRSKYMTAEEIESILRMQHAAT
HSSDPYVDDYYHQACLAKKSAGSRLKHHFCPTHLRDLPSRARANTEPHAFLQVDALGRLP
FSSIRRPRPLLEVEPPFSAADGSIEQNVSEKPLEQEPMLAARITIEDGLCLLLDVDDIDR
LLQFGQPQDGGIQLRRCRQVLLEGLAASLQLVDPLGKGGRTVGLAPKDDLVFLRLVSLSK
GRKLLSKYLQLLYPGGELTRIVCMAIFRHLRFLFGGLPSDLSAAETTTNLANTVSACVRD
MDLGALSACLAAVVCSSEQPPLRPLGSTAGDGASVILKAILERATELLTNPQAASNYSMQ
NRALWQASFDAFFTLLTKYCLSKYDSILQSLLMQAPPNTASIGSEAARAISREMPIELLR
SSLPHTNEHQRKILLDFAQRSMPVTGFNAHGSGSGSQINSESVPG
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggatggattcgatgatgagggtggcattgaaaagatccccaaccagaaggctttcaag
ggattagcagagagttcatcagaagatgcacgctttgatgcatcacaatatgcattcttt
gataaggatgttatggaggaggttgaactaggtggattagaagatgaagatgatgatgtt
ccattaattgggtttgatgatgacgagtatccgttgtctgatagagaagagttgcggggt
gaaaacttaggatcattatctgatattgatgatcttgtgagcactttttcaaagttgaat
aaagctgttagtgaacccagaactgctggagttattggcgataggggatcattctctagg
gaaagttcatccactacagagtgggcacaagagtcagattttcccaactggttagatcca
catatttttgattcagaaaatgttcgggaaggtaaaagatggtcatcgcagccacatcct
tctgctcgtcttggagactcaaaaccattgtacagaacatcttcatatcctcagcagcca
caacagcagcagcactttagtgaaccagttttaatacccaagtcttcttttacttcgtac
ccccctcctggtggtcgatctcaggcatcaaatcagcattctcaccaactcaacatgcca
tctcttggtggatctccgctacccttctcttcaccaaacctgtctccgttctctaattct
cagcttcatttgcaaggcctatctcatggattacattatggtggaaacctaacccaattt
gcctcccaaggtctctccatgaataatcggccacagggtcactgggggaaccaggccaac
ctattttctggagatcattccaatcttttgaacaacttgttacaacagcaattgcctcat
ccaagtgggttagtcccccagcagttgatgtctcagcagcagcagcagcaacaacagaga
ctgcatcatccagttcaaccatctcttgcccatttttcagctctccagtcccaattattt
ggtagccattcttctccatcaccacatgtaataagcaagtatgaatcaatgctggggatg
gctgaattaagagaccaaaggacaaaagcgacacaaaggggtaggcagaacctgcgctat
tctcaacaaggctctgatacaagtagccaaaagagtgataacgggtggccacagttcaga
tccaagtacatgactgctgaagaaatagaaagtattcttagaatgcagcatgctgcaaca
cacagtagtgatccttatgtagatgactattaccaccaggcttgtcttgcaaaaaagtct
gcagggtcaaggttgaaacaccatttctgcccgactcacctgagggacctgccttcccga
gcacgtgcgaacactgagcctcatgcctttctccaggttgatgctttgggaagactaccc
ttttcttctatacgccggcctcgccctctccttgaagttgaacctccattctctgctgct
gatggtagcattgagcaaaatgtttctgagaagcctcttgaacaagagccaatgcttgca
gcacgaattactatagaagatggcctgtgtcttcttcttgatgtggatgacattgacagg
ctcttacaattcggtcagccccaagatggtgggatacaactgagacgttgccgtcaggtc
ctgttagaggggcttgcagcatcgcttcagctagttgatccgcttggaaaaggtgggcgc
acagtaggactggctcccaaagatgaccttgtgtttttacgactggtctctctttccaag
ggtcggaagctcctctcaaagtacttacagctcctctatcctggtggtgagcttacacgc
attgtctgcatggcaatttttcgtcacctcaggtttttgtttggtggcctcccctctgat
ctgagtgctgcagaaacaacaacaaatcttgcgaatactgtttctgcatgtgtgcgtgat
atggatcttggtgcacttagtgcttgtcttgctgccgtggtttgctcctcagagcagcct
ccactccggccgcttggaagcactgctggagatggggcttctgtcatcttaaaagccatc
cttgagagggcaactgaactattgacaaatcctcaggctgccagcaactacagcatgcag
aaccgggccctttggcaggcatcttttgacgcgttttttactctactcacaaagtattgt
ttaagcaagtatgacagtattttgcaatcattgctcatgcaagccccgccgaatacagca
tctattgggtcagaggctgcaagagctataagcagagagatgccgattgagctgctacgt
tcaagtcttcctcacaccaatgagcatcagaggaagatattactggattttgcacagcgc
tccatgcctgttaccggatttaatgcccatggcagtggtagtggaagtcaaattaattct
gaatcagttcctggttag
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