Nelumbo nucifera (sacred lotus): 104587998
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Entry
104587998 CDS
T04131
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03008
Ribosome biogenesis in eukaryotes
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104587998
09123 Folding, sorting and degradation
03018 RNA degradation
104587998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nnu03021
]
104587998
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104587998
03009 Ribosome biogenesis [BR:
nnu03009
]
104587998
03016 Transfer RNA biogenesis [BR:
nnu03016
]
104587998
Transcription machinery [BR:
nnu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104587998
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104587998
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
Pre-60S particles
RNases
104587998
Transfer RNA biogenesis [BR:
nnu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104587998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
104587998
NCBI-ProteinID:
XP_010244084
UniProt:
A0A1U7YX89
LinkDB
All DBs
Position
Un
AA seq
1064 aa
AA seq
DB search
MGVPAFYRWLAEKYPRVVVDVVEEEPVEIDGICIPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFENIFNYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAAEAAAEEERLREEFEKEGRKLPPKQASQVFDSNIITPGTEFMAILSVALQYYIHL
RLNNDPGWRSIKVILSDANVPGEGEHKIMSYIRLQRNLSGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKSGEFDEKGESAAVSKK
PYQFLNIWTLREYLEFDMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLLAVYKKEFGAMGGYLTNSSKPNLSRVEHFIQAVGSFEDKIFQKRARLHQRQAERIK
REKAQAKRGDDAEPQVMPDSLVAVAHFHGSRLASAPSPSPYKQKGSNNSSTSSMSVIKEN
LRPRKVACLSSGSTIGAAIVEAENSLAMIHENKEELKMKLKELIREKSDLFNSENMEEDK
VKLGDPGWKERYYEQKFSVKTPDELERIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY
HYAPFASDLKDLGQLEIRFTLGAPFKPFNQLMGVFPAASSHALPEQYRKLMTDLNSPIID
FYPIDFEVDMNGKRYSWQGIAKLPFIDEDRLLAEIKKVENTLTEEEVRRNSMMHDMLFVT
SSHPLSPYIFSLDDRCRQLSDEERFEIKEKLDPRARATRSGGMNGYISLCRGDPCPPIFR
SPVTGMEDIMNNQVICAIYSLPDAHEHITRPLPGVIFPKKTVAIGDVKPAPVLWHEDNGR
RPWENNRKNTPGSISGQHLGEAAHRLVINSLQSKMEQNGGHHRYNAPTYAAGGASQNGRY
HNQEYHRTAPPMADYPADRYAAATTVQSRPDHGYRQQYVSSAPQPHHQYERWTDPQYRSN
WRPARDYPPGPFQHSGRPQYPPRPVVPVPPVAGPPVHPGGGGYGHWGYQAYEATAHNQWG
GVRGAPPNHGEVIGGHGHPQPSGNRYSALDRGSRRPPSSGYNRH
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttctataggtggttagcggagaagtatccacgagtggtggtggac
gtggttgaagaagaaccggtcgaaatcgatggcatttgtattcctgttgacaccagtaaa
cctaaccctaataacatcgaatacgacaatctctatctcgatatgaacgggatcatccat
ccttgctttcatcctgaagaccggccttctcctacaacatttgatgaggtatttgagaac
atattcaattatattgatcgactttttgtgatggtgcggcccaggaagcttctttacatg
gctattgatggtgttgctccaagggccaaaatgaatcagcaacggtctaggcgtttcagg
gcagccaaagatgcagcagaagcggcagctgaagaagaacggcttcgagaagagtttgag
aaggagggcagaaaacttccgccaaaacaagcgtcacaagtctttgattcaaatattatc
actcctggaactgagttcatggctattttgtcagttgcactgcagtactatattcatctt
agactaaacaatgatcctggatggcgatcaattaaggttatcctttctgatgcaaatgtt
cctggtgaaggggaacacaaaattatgtcttacattcgtcttcagagaaacctatctgga
tatgatccaaatacacgccattgcttgtatggtttggatgcagatttaatcatgttggca
ttggctactcatgaagttcatttctcaatcctgcgagagattgttttcacccctggacaa
caagacaaatgcttcctttgtggtcaaatgggtcatttagcagcagattgtgaaggaaaa
gcaaaaagaaagtcaggggaatttgatgagaaaggtgaaagtgctgctgtctccaagaaa
ccttaccagtttctaaacatctggactctcagagagtacctggagtttgacatgagaatt
cctaatcctccgtttgagatagattttgaatgcatcgtggatgactttatattcatgtgt
ttctttgttgggaatgattttttgccgcatatgcccacgttggagattcgagagggtgct
atcaacttgctgttggctgtttacaaaaaggaatttggggcaatgggtggctacttgact
aactcaagcaagccaaatttgagcagggtggagcatttcattcaggcagtcgggtccttt
gaggataaaatatttcagaaaagagctcgactgcaccagcggcaggcagaaagaataaag
cgtgaaaaggcacaagcaaaaagaggagatgatgctgaacctcaagtcatgcctgattct
ctggttgcagttgctcactttcatggttctcgtcttgcttctgcaccttcaccctcgcca
tacaagcaaaaaggatctaataacagttcaactagttcaatgtctgttattaaagaaaat
ctgcgcccccgaaaagttgcatgcttgtcctcagggtccactataggcgctgctattgtt
gaagcagaaaatagtcttgcaatgatacatgaaaacaaggaagaattgaagatgaagctg
aaagaattaattcgcgagaagtcggacctctttaactcagaaaatatggaggaagacaag
gtcaaattgggagacccaggttggaaagaaaggtactacgaacaaaagttttctgtaaaa
actcccgatgaacttgaaagaatacgaaaggatgttgttctaagatatacagaaggctta
tgttgggttatgcactattactatgaaggtgtttgctcatggcagtggttttatccttat
cattatgcaccatttgcttctgatctcaaggatcttggtcagttggagataaggttcaca
ttaggtgcccccttcaaaccatttaatcagctgatgggggtttttccagctgcaagttcc
catgcacttcccgagcagtataggaaattgatgacagacctaaattcacctattattgat
ttttatcccatcgatttcgaagtggacatgaatggaaagcgatactcttggcagggtatt
gccaaattgccttttattgatgaagatcggcttcttgctgagataaaaaaagttgaaaat
actttgacggaagaggaagtgcgaagaaacagtatgatgcatgacatgcttttcgttact
tcatctcatcctctctctccatacatattttctcttgatgatcgctgtagacaattgtca
gatgaagagcgttttgaaattaaagaaaaacttgatcccagagctagggctacacgcagt
ggtgggatgaatgggtacatatcactttgtcgtggagatccttgtcctcctattttccgc
tctcctgttactggaatggaagatattatgaataatcaagtcatatgtgctatatacagc
cttccagatgcacatgagcatattacacgaccattgcctggggttatattcccaaaaaag
actgttgctataggagatgtcaaaccagctcctgttttgtggcatgaagataatggaagg
aggccatgggaaaataacaggaaaaatacaccgggatccatttctggtcaacatcttggg
gaggccgcacatcggcttgttattaacagcttacagtcgaagatggaacagaacgggggt
caccacagatacaatgcaccaacttatgctgcaggtggtgcatcccaaaatggtagatat
cacaatcaggaatatcacagaacagcaccacctatggccgactaccctgctgatagatat
gctgctgccaccaccgtccaaagtagaccagatcatgggtacaggcagcagtatgtttca
tcagctccccaaccccaccaccaatatgaaagatggacagatcctcaatatagaagtaat
tggaggccagcccgtgactacccacctggtccattccagcatagtgggaggcctcagtat
cctcccagacccgtggtacctgtacccccagtagctggacctcctgttcatcctgggggt
ggtggatatggtcactggggttaccaagcatatgaagctactgcccacaatcaatgggga
ggtgttcggggtgctccacctaatcacggagaggttattggagggcatggtcatccacag
ccatcaggcaatcgttattcagccttggataggggaagtaggcggccaccttcctctggg
tacaaccgccactaa
DBGET
integrated database retrieval system
