Nelumbo nucifera (sacred lotus): 104589524
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Entry
104589524 CDS
T04131
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03022
Basal transcription factors
nnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104589524
09124 Replication and repair
03420 Nucleotide excision repair
104589524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nnu03021
]
104589524
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104589524
Transcription machinery [BR:
nnu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104589524
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104589524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
Motif
Other DBs
NCBI-GeneID:
104589524
NCBI-ProteinID:
XP_019051904
UniProt:
A0A1U8PZC5
A0A822Y9K5
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All DBs
Position
Un
AA seq
638 aa
AA seq
DB search
MWKCMRAASLWTIWEERNGRIFQEKERSLAEVKECIMTRTISWLKTSDLFVNYSIDDLRR
NWAVVASTTSTNIILQAERKSPPEGHKFTKEGSKQALLNLTQDPEMGGGYIFEFDKFSDR
DVCRDFVGKVLGKIQSMVSSGQDARAVSERSAVAVHDEQLSTREMEHRMKLLREDSELQK
LHKQFVIAGVLTESEFWATRKKLLDTDARTSKQRVGFKSAMLADVRPLTDGRTNKVTFSL
TPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWTKYCRAEYLHRTKNSIAAAAEAAEDEE
LAIFLKHDDILASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGNKEVMDSEYELY
KRTLSQDLNRHAAVVLEGRALDLELGDTRTVAEALARSKQVELATESSDEKANEKRLERL
SQMAGIEDLQSSRGLPFAPLCIKDPREYFDSQQANALQALGDTIGGMKPINYSLSTEEAY
GSLRDLISEMKATGLNHPVVKPDVALKVLNALTQHLSSTKHHVGKNPQESVLDRLPRKTK
EELLHHWTSIQELLKHFWSSYPITTTHLYSKVTRLKDAMSQIYPKLQEIKESMQSDFRHQ
VSLLVQPMLQALDAAFAHYEAELQKRSTKAGTRPNGTV
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagtgcatgagagcagctagtttgtggacaatttgggaagaaagaaatggtaga
attttccaagaaaaggaaagaagccttgctgaggtcaaggagtgtatcatgacaaggaca
atatcttggctgaaaacttcagatctgtttgtgaactattccattgatgatttgaggaga
aactgggcagtagtggcatccacaacttccacaaacattattctacaagcagaacggaaa
tctcccccagaaggtcataaatttaccaaggagggatccaaacaagcattgctgaatctt
acacaagaccctgaaatgggtggtggttacatttttgagtttgacaagttctctgatcgt
gacgtttgtcgagattttgttggtaaagtcctggggaagatccagtctatggtatcatct
ggacaggatgccagagcagtttctgaaagatctgcagttgcagttcatgatgaacaacta
agtacaagagagatggagcatcgaatgaagctgttgcgggaggatagtgagttgcagaaa
ctacataagcaatttgtcattgctggtgttttgacagaaagtgaattctgggctacaaga
aagaagttgcttgatacagatgcccggacatcgaaacaacgagtgggattcaaaagtgcc
atgcttgcagatgttaggccattgactgatggtcggaccaacaaggttacatttagcttg
actccagagatcattcatcagatttttgctgaaaagccagctgttcatcaggcatttttg
aattttgttccaaacaagatgacagaaaaggatttctggacaaaatactgtagagctgaa
tatctccacaggacaaaaaattccattgcagctgccgcagaagctgctgaagatgaggag
cttgctattttcttaaagcatgatgacatattggccagtgaagcccggcggaagatcaga
cgtgttgatccaactctggacatggaagcggatcaaggggatgattacatgcatcttccg
gatcatgggatttttcgtgatggaaacaaggaggttatggattcagagtatgaattatat
aagaggactctatcacaagaccttaaccggcatgcagcagttgttcttgaagggagagct
ttagatttggagttaggagacacaaggactgtagcagaggcacttgccaggtccaaacag
gttgaattggctactgaatcctctgatgagaaagcaaacgagaagcggttagaaaggtta
tctcagatggctgggattgaagatcttcagtcttctcgtggcctaccatttgcacctctt
tgcataaaggaccctcgagagtattttgattctcaacaagctaatgcacttcaagcttta
ggggatacaataggtggaatgaagccaatcaattacagcctcagcacagaggaggcatat
ggttcattgagggatctcatttctgagatgaaggcaactggtctgaatcatcctgtagtt
aaacctgacgttgctttaaaggttcttaatgcattgacacaacatctctcaagtactaag
catcatgttggaaagaaccctcaagaaagtgtccttgataggctgccaagaaaaactaaa
gaggaactcctgcatcattggacatctattcaggagttactaaagcatttctggtcatca
tatccaataacaactacacacctttattcaaaggtaaccagactgaaggatgccatgtcg
cagatctatcccaagcttcaggagataaaagagtctatgcagtcagatttccggcatcaa
gtttctctccttgtccaacccatgcttcaggctctagatgctgcttttgcacactatgaa
gctgagttgcaaaagagatccacaaaggctgggactagaccaaacggaactgtttag
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