Nelumbo nucifera (sacred lotus): 104589972
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Entry
104589972 CDS
T04131
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104589972
03015 mRNA surveillance pathway
104589972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104589972
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104589972
mRNA cycle factors
P-body specific factors
104589972
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
104589972
NCBI-ProteinID:
XP_010246760
UniProt:
A0A1U7Z164
LinkDB
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Position
Un
AA seq
612 aa
AA seq
DB search
MKDPFDRTKVVLRHLPPTLSQSALTEQIDGRFAGRYKWICFRSGKNSQKHQRYSRAYIDF
KRPEDVIEFAEFFDGHIFVNEKGSQFKTIVEYAPSQRVAKSWSKKDGREGTIFKDPEYLE
FLDLISKPVENLPSAEVQLERREAERAGAAKEVPIVTPLMDFVRQKRAAKGGSQRSLSNG
KLSRRATGTSPGSSGSSSTKRGSEKRRVSTSMYVLRDSVKNTSGKDKSTYILVPRREDQE
LTDKSVSLVIASGTETAEDEKVPKTDGAISTATGSADTGKKKVLLLKGKEREIPNAPEVG
VSQQQSVISPIRNSPNSTAFKQSQRRDVSGRMIRSILSKEARQGQSTTAIQSDQQSQTMN
LEKEKRPPRPTTMRSVLKDHLSSISQAASSCDTEMKRIQDDKVAVNDVHGVSSVNEKQEK
RARNKDRPDRGVWTPLRRSDISHASDDSSSSSFSGPTQVLSDSLEGMTINQLVAPGAGKL
GDDVLDEPESGNKSFFPSGKARSQEASVHNSRVGRGGNVSSAYDSCSHEVKSEIHHASKG
EVKTIGSGRSNFSSAENGSHRQFSRRGSVHGGKDIDGNSLSTSDGKPSKRGNATGYGSHE
KQVWVQKLGSGS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatccgttcgatcgaaccaaagtagtgctgcggcacttgcctccgacgctctcg
cagtcggcgcttacggagcaaatcgatggccgctttgccggccgatacaagtggatttgt
ttccgctccgggaagaacagtcagaagcatcagcgatattcccgagcatatattgatttc
aagaggccagaggatgttattgagttcgccgagttcttcgatggccatatttttgttaat
gagaagggttctcagtttaagactattgtagaatatgccccttcgcaacgggttgcgaag
tcatggtccaagaaagatggtcgtgagggaacaatattcaaagatcctgaatacctggag
tttcttgaccttatttcgaagccagttgaaaaccttcctagtgcagaggtacaattggaa
agaagagaagcagaacgagctggggctgcaaaagaggttcccatagttacgcctctgatg
gattttgttcgccagaaaagagctgctaaaggtggatcgcagaggtcattatctaatggg
aagcttagcagacgagccacaggaacttcacctggtagttctgggtcaagttccaccaaa
aggggttctgagaagagaagggtctccacctcaatgtatgtcctaagggacagtgtgaag
aacacaagtggaaaggacaaatcaacctacattctagtgcctcggcgagaagatcaggag
ctgacagataagtctgtttctttggtgattgcaagtggaacagaaacagcagaagatgaa
aaagtccctaaaactgatggagctatttcaacagctactggttctgctgatactggaaag
aagaaggtcctgcttctgaaagggaaagagcgagaaattcctaatgcgcctgaggtgggt
gtatcacaacaacagagtgtaatatctccaataagaaactcaccaaattcaactgctttc
aaacagagccaacggcgtgatgttagtggaaggatgatcagaagtatactatcaaaggaa
gcacgccagggtcaatcaactacagcaatccaatctgatcaacagtcccagaccatgaat
ttagagaaggaaaagcgcccacctcggcccaccacaatgcgttctgttttgaaagatcac
ctttctagcatttcacaggctgcaagtagttgtgatactgagatgaaaaggatacaagac
gataaggttgctgtgaatgatgtgcatggagtttcgtcagtgaacgagaagcaagaaaaa
cgtgctagaaacaaggatagacctgaccgaggagtctggacacctcttcgtcgttcagat
atatcacatgccagtgatgattcatcatcatcctccttttctggacccacacaagtgctg
tcagattctttagaaggcatgaccataaatcagcttgtggctcctggagctggtaaactt
ggggatgatgtgttggatgagccagaatctggtaataaatcattttttcccagtgggaaa
gcacgaagccaggaagcatctgttcacaattctcgagtaggacgtggtggcaatgtttct
tctgcatatgattcttgtagtcatgaagtaaaatctgaaattcaccatgcaagcaaaggt
gaagtgaaaaccattggaagtggtcggagcaatttttcttctgcagagaacggttcacat
aggcaatttagtcgccgtggatcagtgcatggagggaaggatattgatggaaattccctt
agtacgagtgatggaaagccttccaaaaggggaaatgctactggctatggttcccatgag
aaacaagtatgggttcagaagttgggttctggttcatag
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