Nelumbo nucifera (sacred lotus): 104590025
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Entry
104590025 CDS
T04131
Name
(RefSeq) exosome complex component RRP45B-like
KO
K03678
exosome complex component RRP45
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104590025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104590025
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104590025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
104590025
NCBI-ProteinID:
XP_010246832
UniProt:
A0A1U7Z3T5
A0A822Z5H3
LinkDB
All DBs
Position
Un
AA seq
456 aa
AA seq
DB search
MEQRLANTWRMTVNEKKFIETALLSDLRVDGRRPFDYRRLTVKFGREDGSSEVQLGQTHV
MGFVTSQLVQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEFAVELGRIIDRGLRESRA
IDTESLCVLAGKLVWSIRVDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQEV
IIHPPEAKEPLPLIIHHLPIAVTFAFFGDGNTVVIDPTHSEEAVMGGRMTATLNTNGDVC
AVQKAGGEGVMQNVIMQCLRIASVKATDITSKIKNAVEAYKTESSLRKIKRHPSMVAIDV
SGPESKGNQSVLQKEGIFSRHDRERSAIKPEVSCNSDINGKSENQSQQGGSGAGSDNRSS
IGGPSRWDPHSQGVDPISLKISLSSSGNITRNKEHGGASCEKSTEIKPEDASLDVISSTP
MPIEPAAMGQGSGEKTLRDAVKPKNMRKKKTSSTNH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaagattggcaaacacttggcggatgacagttaatgaaaagaagtttattgag
acagcgttactttcggacctcagggttgatggtcgtcgtcctttcgattatcgtcggttg
actgttaagtttgggagagaggatggatcttcagaagtgcagctaggacagactcatgtt
atgggatttgtcacttctcaactagtacaaccatatcgagacaggccaaatgaaggaacc
ctttctatatatactgagttttcaccaatggctgacccttcatttgaggcggggcgtcct
ggggagtttgctgtggaacttggacgaataatagaccgaggtttaagggagagcagggca
atagatacagagtcactttgtgtgcttgctggaaagttagtctggtccattcgtgttgat
cttcacattcttgacaatggagggaatctggttgatgctgctaatattgctgctttggct
gcactactgacattccgaaggccagaatgtacattaggtggtgaagatggtcaggaagtg
ataattcatccacctgaggcgaaggagccactccctttgataatacatcatcttcctata
gcagtaacctttgcattttttggtgatgggaacactgtggtgatagatccaactcacagt
gaagaggctgttatgggaggaagaatgactgccacattgaatacaaatggtgatgtctgt
gctgtccaaaaagcaggtggagagggtgtcatgcagaatgtgattatgcagtgtttgcga
attgcttctgtgaaggctactgacataacaagcaaaataaaaaatgcggttgaagcatac
aaaacagaaagttctcttaggaagatcaagcgtcacccatctatggttgctatagatgtc
agtggacctgagagtaagggtaatcaatcagttcttcagaaagaaggcattttttcaagg
catgatagggagaggtcagcaattaaaccagaggtgagctgtaatagtgatattaatggt
aaaagtgaaaaccaatctcagcaaggaggaagtggtgcaggcagtgacaatagaagttcc
attggtggcccatcaagatgggatccacattcacagggcgtcgatccaatttcccttaaa
atttctctttcttcatctggaaacataacaaggaataaggagcatggaggggcaagttgt
gaaaagtccactgaaatcaagcccgaggatgcatctttggatgttatttcttctactcct
atgccaattgaaccagccgcgatgggacaagggagtggagagaagactttgagagatgcc
gtgaagcccaaaaacatgagaaaaaagaaaacatcctccaccaatcattga
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