Nelumbo nucifera (sacred lotus): 104590856
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Entry
104590856 CDS
T04131
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104590856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104590856
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104590856
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104590856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
104590856
NCBI-ProteinID:
XP_010247912
UniProt:
A0A1U7ZJG3
LinkDB
All DBs
Position
Un
AA seq
323 aa
AA seq
DB search
MREVQLPLNQTQKVRLQAALQQLQDSSAASVTVSDTIPVNQEDGVLKGHGTIELDGEVVA
TLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRIEINFSQDAVLMLSSMN
LPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLGRGQLLTV
PPYLVKRRKQHFHHLEQYGIDLILGCNGFIWVGEHVEARDNMVEDQENKPEQQISQSNQR
SMNLEEQESIYTPLATRQNICRFANAVRVLSTLGFNLTVEVISDTVDFSTSLNLDMHEML
GAEFCVQIAEKEVKRRSSISKKK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgagagaggtgcagcttccactgaatcagacacagaaggttagactacaggcggctctg
caacaacttcaggactcctctgctgcttctgttacagtttctgacaccatccctgtaaac
caggaagacggcgttctcaaggggcatggaactattgagcttgatggtgaagtggttgcg
actctatgtggagtagtcgagcgcgttaacaagctggtctatgtccgtactttaagggct
aggtacaagccagaagttggagacattattgttgggcgtgtcatcgagattgctccaaag
cgatggagaatagagataaattttagtcaagatgcagtattgatgctttcttcgatgaac
ctacccgatgggatccagaggcggcggactgctgttgatgaactgaacatgcgcagtatt
tttgaagagaatgatgtcatatgtgcagaggttcgtggtttccagcatgatggcagttta
cacctacaggcaagaagtcagaagtatggaaagttgggaaggggtcaattgttgactgtc
cctccatatttagtgaagagacgcaagcagcatttccaccaccttgaacagtacggaatt
gatttgattcttggatgtaatggatttatctgggtaggtgaacatgtagaagccagggat
aatatggtagaagatcaagagaacaaacctgaacaacagataagccagtcgaatcaaaga
tccatgaatcttgaagaacaagaaagcatttacactcctttggcaacaaggcagaacata
tgtaggtttgcaaatgctgttagagttttgtctacgttgggcttcaatctgactgttgaa
gtgatctcggacacagttgattttagtacttcactgaatcttgatatgcatgagatgctt
ggagcagagttttgcgttcagattgcagagaaagaggttaaacggaggagctcaatatca
aaaaagaaatga
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