Nelumbo nucifera (sacred lotus): 104591455
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Entry
104591455 CDS
T04131
Name
(RefSeq) zinc finger CCCH domain-containing protein 27
KO
K13192
RNA-binding protein 26
Organism
nnu
Nelumbo nucifera (sacred lotus)
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nnu01009
]
104591455
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104591455
03041 Spliceosome [BR:
nnu03041
]
104591455
Protein phosphatases and associated proteins [BR:
nnu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104591455
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104591455
Spliceosome [BR:
nnu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104591455
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PWI
Nup35_RRM_2
zf_CCCH_4
RRM_Nup35
DUF5323
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
104591455
NCBI-ProteinID:
XP_010248594
UniProt:
A0A1U7ZJU0
A0A822YE79
LinkDB
All DBs
Position
Un
AA seq
1106 aa
AA seq
DB search
MIRDMKFEDSSLTGYLVKNLESLTEADPLILAKYVEALLKKDKPVKELQKLCAENLVEFL
GQGTESFITKLFQALEDGSIVVSGENSDAIKQVEPPNSFISEDPIERKISSPNTEGLSPS
SCHASDTEEKEFSDDDDDDRNHKHRRRETRSQSFDKYGQEQLLSRPNRKRNKPFENGQLF
LEGDPQSSEVRKQYNPTPPERDFSAKFEKRRPSVAALSRPPLDLGQRTKVNPPLRGDPGT
RFDLSSVGRLPIGRGRGRSSGPWNQHDSRFSSVDTLDFASQMAPQGPTPGLFPGRGLPNA
ANTQNASWGAFGLIPGMSNGALDTLHPLGLQGTLRSPSLNIGMPRQRCRDFEERGFCLRG
DMCPMEHGVNRIVVEDVQSLSQFNLPVSLPSACLLGMPAGTGPLPSVSAPNLFINSKNSH
GKSGKSGAADDGLNLNGVLPVSAGSGEADLYDPDQPLWNTDRPETSSALLKLPSTKIHEA
ETLWDNDASDCHNLRLADGIDSGRSITTNIGSQSATSSVWGRIRNSGNKLEMSGKNDSTI
TSTSYFGNEVKDLEEGLPAVPINEHQEKQIVTDDIVPKAMNSSAAAKRSDPARNAGRTSQ
KASRTLFVNCIPLKNNKREALLSHFQKFGEVIDIYIPVNSEKAFVQFSKREEAEAAVKAP
DAVMGNRFIKLWWANRDNIPDDGISSGNTVSAAPRGMTAASTPLLSSIAEIGKENLLSAA
SKVSASVAPDVPAGASVNPKPVVTNGAKSTAHLQKKLESLELLKEELRIKQEMLDQKRND
FRRQLDKLEKQATTVKPDAVAEQAIKRHKVGPVTPAKIATPRSSNPSTTGTQPTDEKTID
SNNSGDIIASPNSKTGSSVVLQSPRSLKQPSRSLAPVGPPFFVNRFKLDNRPTTFRILPP
LPADFANVAVLKEHFSIYGDLSAVELEGSTDTHTGTDGSGPSKNCSARVTFTTRRSAERA
FGNGKCWQGHNLQFVWVTLSSNTNSDHGRRENSPAPTPRGIADAEIPTKNVSSACSLSST
GKPTNTVSKEAPAVENEESKDLDGISGSVDCMELVEACQSSSAAMASCEERSPKEDILIV
EDDQTVRSEDIGNFNTQLSHSMAEGV
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgattagagatatgaaatttgaggactcctctttaactggatatctcgtgaagaacctt
gaatcactgacagaagctgaccccttgattcttgcaaaatatgtggaagcattgttaaag
aaggacaaaccagttaaagaactgcagaagctctgtgctgagaatctggtcgaatttctt
ggtcagggcacagagtctttcatcacgaagttgttccaggctttagaagatggttcaatt
gtggtgtctggtgagaattcagatgccatcaagcaggttgaaccaccgaattcgttcata
tcagaggatccaatagaacgcaaaatttcctctccaaatactgagggactttctccttct
tcttgtcatgccagtgatactgaagagaaagaattcagtgatgatgacgatgatgatcgc
aatcataagcatcgcaggcgggaaactagatctcagtcttttgacaaatatggacaagag
caacttttaagtaggccaaacagaaagcgtaacaaaccttttgaaaatgggcagctgttc
ctggaaggtgatcctcagtcaagtgaagtccgaaaacagtataaccctactcctccagaa
agagacttctctgcaaaatttgagaaaagacgtcctagtgtagcagcattgtctcgtcct
cctttggatttaggtcagaggaccaaagtgaacccgccattgcgtggtgaccctggtact
cgttttgatttatcatctgtaggtcggcttcccataggtagaggaagaggaaggagttct
ggcccctggaatcaacatgattcaagattcagctctgtggacacacttgattttgcatca
caaatggctcctcagggacctactcctggtctatttcctggacgggggttgccaaatgct
gctaacacacagaatgcatcttggggtgcatttgggttaattccagggatgtctaatggt
gctctagatacactccatccacttggtttgcaaggaacacttagatcaccatccttgaat
attggcatgcctcgccaacgatgtagggactttgaggagcgaggattttgtctaaggggg
gatatgtgtccaatggagcatggtgtaaatcgaattgttgttgaagatgttcagagcctc
tcacagttcaatttacctgtttctcttccaagtgcatgcctactgggaatgccagctgga
acaggacctttaccttctgttagtgctccaaacctgtttataaacagcaaaaattcacat
ggtaaaagtggcaagtctggtgcagctgatgatggattaaacttgaatggtgtgttacct
gtgtctgctggttctggcgaagctgacctttatgatcctgatcaacctttatggaatact
gaccgtcctgagacatcaagtgcacttctaaagcttccttcgaccaagattcatgaagct
gaaaccttatgggacaatgatgcttctgattgccacaatttaaggttagctgatggtatt
gatagtggtagaagcatcacgaccaatattgggtcacagagtgcaacttcttctgtttgg
ggacggattcggaattctggaaataaattagaaatgtctggaaaaaatgacagtacaata
acttctacaagttattttgggaatgaggtgaaagacctagaggaggggttacctgctgtt
ccaattaatgagcatcaagagaagcagatagtcactgatgatattgtaccaaaagctatg
aactcctctgctgcagcaaaacgaagtgatcctgcacgtaatgctgggcgaacatctcag
aaagcttcccgtactctttttgtcaactgtattcccctaaaaaataacaagcgggaggct
cttctttcgcattttcaaaaatttggagaggttattgatatttatattccagtgaatagt
gaaaaggcttttgtccagttctctaaaagagaagaggctgaggctgctgtaaaggcacct
gatgctgtgatgggtaaccgctttataaagttatggtgggctaatcgggacaacattcct
gatgatggtataagcagtggcaacactgtatctgctgctccccgtggcatgacagctgct
tctactccacttttgtcatctattgctgaaataggaaaggaaaatctcctatctgcagct
tctaaggttagtgcttcagtggctcctgatgttcctgcaggggcctctgttaaccctaaa
cctgttgtgacaaatggcgccaaatctactgctcatctgcaaaagaaactggagagttta
gagcttctgaaagaggaactccgcataaagcaggaaatgctcgaccaaaagcggaatgac
ttccggcgccagttagataaacttgagaaacaggctacaacagtcaagcctgatgcagtt
gctgagcaagctatcaagagacacaaagtggggcctgtaactcctgccaaaattgcaact
ccaaggtcctcaaatccttctactactgggacacaaccaacagatgagaaaaccatagat
agtaacaattctggggatattattgcatctcccaattcgaaaacaggctcatctgtggtg
ctgcagtcacctaggagtttgaagcagccaagtcgttcgttagcaccagtaggacctcct
ttttttgtgaataggttcaaattggataaccgccctacaacatttcgaattcttccgcct
ttaccagctgattttgcaaatgttgctgttttgaaggaacacttttcaatatatggtgat
ctgtctgcagttgagctggaaggttcaacagatacacatactggtactgatgggtcaggg
ccatcaaaaaattgttctgctcgcgtaacttttacaacacgtcgttcagctgagagagca
tttggaaatggtaaatgttggcaaggtcacaatttacagtttgtgtgggtgacactctcc
agtaataccaatagtgaccatggcagacgagaaaattctccagcacctacccccagggga
attgcagatgctgaaataccaacaaagaatgtctcgtctgcgtgttctttatcaagtaca
ggaaaaccaacaaacactgtttctaaggaagcacctgctgttgaaaacgaggaatctaag
gatttggatggaattagtggtagtgttgattgtatggaactggtagaagcttgtcaatca
agttctgctgccatggcatcatgtgaagaaaggtcacctaaagaagatattttgattgtt
gaggatgaccaaactgttagatcagaagatattgggaattttaacactcaactctcacat
tccatggctgagggtgtctga
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