Nelumbo nucifera (sacred lotus): 104592428
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Entry
104592428 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104592428
09122 Translation
03013 Nucleocytoplasmic transport
104592428
03015 mRNA surveillance pathway
104592428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104592428
03041 Spliceosome [BR:
nnu03041
]
104592428
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104592428
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104592428
Spliceosome [BR:
nnu03041
]
Complex C
Other components
EJC/TREX
104592428
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104592428
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104592428
NCBI-ProteinID:
XP_010250101
UniProt:
A0A1U7ZFC0
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKALDSVAAKGAGEVAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggataacgatgcttacgaggaagagcttctcgattacgaagaagag
gaagaaaaggccctcgattccgtcgcggcaaagggcgctggggaagtagctaagaagggt
tatgttggaattcacagttcggggttcagagattttcttttgaagccagagctacttcga
gctattgtggactcagggtttgagcatccttcagaagtgcaacatgagtgcattcctcag
gccatattgggaatggatgtcatctgccaagcaaagtctggaatgggaaaaactgctgtc
tttgttctatcaactttgcagcagattgagcctgttgcaggtcaagttgctgcacttgtt
ctatgccatacaagagaattagcttaccagatatgtcatgagtttgagcggttcagtacc
tatttgcccgatattaaggttgctgttttctacggtggtgtcaatatcaaaactcacaag
gatttacttaaaaatgagtgtcctcacattgttgttgggacacctgggaggattttggca
ctagcaagggataaggaccttgcattgaagaatgtaaggcattttatccttgatgagtgt
gacaagatgcttgagtcacttgacatgcggagagacgtgcaggagatttttaagatgact
cctcatgataagcaagttatgatgttttcagcaacactcagcaaagagatccggcctgtt
tgcaagaggttcatgcaagatccaatggaaatttatgtcgatgatgaggccaagttgact
cttcatggtcttgtacagcactacattaaattgagtgaactggagaaaaatcgcaagttg
aatgacctcctggatgcattggacttcaatcaagttgttatttttgtcaaaagtgtgagc
agagcagctgagctgaacaaattacttgttgagtgtaatttcccatccatctgcatccat
tctgggatgtcccaggaagaaaggctgacacgctacaaaggattcaaggaagggcataaa
agaattcttgttgcaacggacttggttggcagggggatagacattgaacgtgttaacatt
gttatcaactatgacatgccagattctgctgacacctacttgcatagggttggaagagca
ggtcgttttggcaccaaggggcttgcaataacatttgtgtcatctgcttccgactctgat
gttctgaatcaggttcaggaacggtttgaggtggatataaaagagctcccagagcaaatc
gatacttccacatacatgccatcttga
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