Nelumbo nucifera (sacred lotus): 104593867
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Entry
104593867 CDS
T04131
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104593867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104593867
03041 Spliceosome [BR:
nnu03041
]
104593867
03009 Ribosome biogenesis [BR:
nnu03009
]
104593867
03016 Transfer RNA biogenesis [BR:
nnu03016
]
104593867
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104593867
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104593867
Spliceosome [BR:
nnu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104593867
Complex C
U4/U6.U5 tri-SnRNP related factors
104593867
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
Pre-60S particles
Helicases
104593867
Transfer RNA biogenesis [BR:
nnu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104593867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104593867
NCBI-ProteinID:
XP_010252211
UniProt:
A0A1U7ZEU2
A0A822YXG8
LinkDB
All DBs
Position
Un
AA seq
1001 aa
AA seq
DB search
MEESPTLGKRKAPDEPESTSKHSPEEIPKPEPAAKRRNSGRTCVHEVAVPTGYTSTKDEA
IHGTLASPVYNGKMAKTYPFNLDSFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA
FRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICN
LHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFKEDNFMKLQDTFTKQKKQGE
GNRSGNAKASGRIAKGGTASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKL
DFNTKEEKDDVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVEL
LFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGK
DERGICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKN
SFHQFQYEKALPDVGQRVSKLEEEAAMLDASGEAEVVEYHKIRLEIAQLEMKMMSEITRP
ERILYFLLPGRLVKVHEGGTDWGWGVVVNVLKKPSAALNKLPSALTASRGGGYIVDTLLH
CSPGSSDNGSRPKPCPPRPGEKGEMHVVPVQLPLISALSKIRLSIPSDLRPLEARQSILL
AVQELGTRFPNGLPKLNPVKDMGIEEPEFVDLVSQIEELERKLFSHPLHKCQDEQQIKSF
QRKAEVNHEIQQLKAKMRDSQLQKFRDELKNRARVLKKLGHIDADGVVQLKGRAACLIDT
GDELLVTELMFNGTFNDLDHHQVAALASCFIPGDRSNEQIHLRTELAKPLQQLQESARRI
AEIQRECKLEVNVDEYVESTVRPYLMDVIYCWSKGATFAEIIDMTDIFEGSIIRLARRLD
EFLNQLRAAAQAVGEVDLEKKFAASSESLRRGIMFANSLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcctacacttggcaagcggaaagccccggatgaaccagaatcaacatcc
aagcattcccctgaagaaatacctaaacctgaacctgcagctaagcgaaggaattcgggt
cgtacatgtgtccatgaggttgcagtaccgactggatatacttccaccaaagacgaagct
atccacggaacccttgcgagtccagtctacaatggtaagatggcaaagacctatccgttc
aaccttgactcatttcagcaggtatctgtggcttgcttggagaggaatgaatccgtcttg
gtttctgcacacacttcagctggtaaaacggcagtcgccgagtatgccattgcaatggct
tttagagataagcagcgggtaatttatacatcaccgctgaaagctctaagcaatcagaag
tatagagagctaagccaagagttctcggatgttggtctgatgacgggtgatgtcactctc
tcgccaaatgcaagttgtttggtcatgacaacagagattctcaggggaatgctttacagg
ggttctgaggttttgaaggaagttgcatgggttatctttgacgaaattcattatatgaaa
gaccgggaaagaggagttgtttgggaagagagtatcatattcttgcctcctgctattaag
atggtatttctttcagcaacaatgtcaaatgctactgagtttgctgaatggatttgtaat
ttgcacaaacagccttgtcacgtggtgtacacagatttccgacctactccattgcagcat
tatgtgttcccgatgggtggatcaggtttgtatcttgttgtggatgagaatgaacagttc
aaggaggacaattttatgaagctgcaggatacattcacgaagcagaagaagcagggtgaa
ggaaataggagtgggaatgccaaagcaagtgggaggattgcaaagggaggtactgcttca
ggcggctctgacatatacaaaattgtgaagatgattatggagcgaaaatttcaaccggtt
atcattttcagcttcagtagaagagagtgtgaacaacatgcaatgtccatgtccaaactt
gattttaacaccaaagaggaaaaagatgatgttgaacaggttttccgaaatgcagtgctt
tgcttgaatgaggaagacagaaacctacctgctattgagttaatgttaccgctacttcaa
cgaggcattgctgttcatcattctggacttcttccaataattaaggaattggtggaactt
ctcttccaagaaggccttgtgaaggctctttttgctacagaaacatttgccatgggttta
aacatgcctgccaaaactgttgttttcacatctgttaagaaatgggatggtgatagtcat
cgctatattggatctggtgagtacatccagatgagtggaagagctggtcgtcgtggaaaa
gatgaacgtggcatttgtatcataatgattgatgagcagatggaaatgaatactctcaag
gatatggttttggggaaaccagctccattggtcagcactttcagactaagttattattca
atcttgaatttaatgagccgtgctgaaggccaatttactgctgagcatgttatcaagaat
tcttttcaccaatttcagtatgagaaggctttacctgatgttgggcaaagggtttcaaag
ctggaagaggaagctgctatgcttgatgcctcaggggaggctgaagttgttgagtatcat
aagataaggcttgagatagctcaacttgagatgaagatgatgtctgaaataaccagacct
gaaagaattctttattttcttcttcctggtaggctggtcaaagtacatgaaggtggaact
gattggggttggggagtggtggtcaatgtgttgaagaaaccctctgcagctttgaacaaa
ctgccttcagcattgacagcttcacgaggcggtggctacatagtggatactttgcttcat
tgctctcctggttcaagtgataatggttctcgacccaagccatgccctcctcgtcctgga
gaaaagggggaaatgcatgtggtcccagttcagttgcctctcatttctgctctcagcaaa
atcagattatctattccttctgatcttcgaccattggaagcaaggcagagtatattgctt
gcagtacaggagctggggacacgttttcctaatggtctcccaaaactcaatcctgtgaag
gatatggggattgaggaaccagaatttgttgatttagttagtcaaattgaggaacttgag
aggaaattattttctcacccactacataagtgccaagacgagcaacaaatcaagtccttc
caaagaaaagcagaggtgaatcatgaaattcaacagcttaaagcgaagatgcgtgactcc
cagcttcaaaaattccgggatgaactcaaaaatcgtgcacgggttctgaagaagcttggg
catattgatgctgatggtgttgtccaattaaagggacgagctgcttgcttgatagataca
ggagatgaactccttgttactgaattaatgttcaatggtacattcaatgatcttgatcat
caccaagtagcagctcttgcaagctgctttattccaggcgatagatcaaatgaacaaata
catttgagaactgaacttgcgaagccattgcaacaactccaagaaagtgcaagaagaatt
gcagagatccaacgagaatgcaaattggaggtaaatgttgacgagtatgtggaatcaaca
gtaagaccgtacttgatggatgtgatatactgttggtcaaagggagcaacttttgcggag
atcatagatatgactgatatctttgaagggagtatcatacgccttgcccgacgacttgat
gaatttctaaatcagttgcgtgctgctgcacaagccgttggagaagttgatttggagaag
aagtttgctgcttccagtgagagtcttcggcgtggtatcatgtttgcgaattcactttat
ctctga
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