Nelumbo nucifera (sacred lotus): 104594732
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Entry
104594732 CDS
T04131
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104594732
03015 mRNA surveillance pathway
104594732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104594732
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104594732
mRNA cycle factors
P-body specific factors
104594732
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104594732
NCBI-ProteinID:
XP_010253475
UniProt:
A0A1U7ZHY5
LinkDB
All DBs
Position
Un
AA seq
1203 aa
AA seq
DB search
MDHPEDECRVGGEHHGKQDDEETAARLDEFKKSMEAKIALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQRESMMDELRSVNLSKFVSEAVTAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDVDRSLKAMKKRSTLKLLMELYFVGVIED
ASIFINIIKDLTSLEHLKDRDTTQMNLSLLLSFARQGRIFLGLPQSGQEIHEEFFKGLNI
TADQKKIFKKAFYTYYDAAAELLQSEHTSLRQMENENSKILNAKGELSDENVTSYEKLRK
SYDQLFRGVSSLAEALDMQPPVMPEDSHTTRVTTGEDASSPAAGKESSVLEPLWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKIAEQSSKTQEQPTDSTSEADQGHVAQDGAEACVDSG
PSQDGKSDEKVKGKEERDKEKTKDSDKDKGKEKDSERKGETEKEKIKGLEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQMLDEEFNFLINKKDQMNIETKIRNIRFVGELCKFRIAPGGLVFGCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFTDLDKSTIEHVLRQLRKLPWSECEDYLLKCFMKVH
KGKYSQVHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQKRIAHMRFLGE
LYNYEHIDSSVIFETLYLILVFGHGTPEQDVLDPPEDCFRIRMVITLLQTCGHYFDRGSS
KRKLDKFLIYFQRYILSKGSIPLDIEFDLQDLFADLRPNMTRYSSIEEVNAALVELEEHE
RAVPTDKANSEKHSDTENRKAPGHTGSNTISENGQSPTNEIEENGRGHVDAGDSESDSGS
DSIDREGHDDEEELYEDKSEVQDDGCDSDEDDDDGGAPGASDEDDEVQVRQKMVAVDPQE
EADFDRELRSIMQESLESRKLEIRARPTLNMMIPMNVFEGSTRDHHGRSVEGESGDETMD
EEGGGGNNKDILVKVLVKRGNKQQTKQMFIPKGCSLVQSTKQKEAAELEEKQDIKRLILE
YNDREEEELNGVGSQTMNWMQTGGSRTSTRGGTSDGTGGRSAGVRQRQHYHSGGGGLYYG
RRK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggatcatccggaagatgaatgtcgcgttgggggtgaacaccatggtaaacaggacgac
gaggaaactgctgctcgtctagatgaatttaaaaagtcaatggaagcaaaaattgctcta
cgtcagagtaatttgaatcctgaaaggcctgactcaggttttcttaggacattagattct
agtatcaagcgcaatacagcagttattaagaagcttaagcagataaatgaagagcagcga
gaaagcatgatggatgagttgcgtagtgtcaacctaagcaaatttgttagtgaagctgtc
actgctatctgtgacgcaaagcttagaacatcagacatacaagcagctgtgcagatttgt
tccttgcttcatcagaggtacaaggatttctcgcctagcctgattcagggtctcttgaaa
gtcttctttcctggaaaatctggggatgacttggatgtggataggagcttgaaagccatg
aaaaaacgcagcactctaaaacttctcatggaactttactttgttggagttatagaagat
gccagcattttcatcaatattattaaggatcttacaagcttagagcacttaaaggaccga
gatacaactcagatgaatttatctcttcttcttagttttgctcgacaaggtagaattttc
cttgggcttcctcagtcaggacaagaaattcatgaagagttttttaagggtcttaatatc
acagcagaccaaaagaaaatattcaagaaggcattctacacatactatgatgctgctgcg
gaacttcttcagtctgagcacacgtctcttcgtcagatggagaacgaaaattcaaagatc
ttaaatgctaaaggggagctcagtgatgaaaatgtgacttcatatgaaaagctgagaaaa
tcttatgatcaattattccgtggtgtctcgtctttagcagaagcactggatatgcaacct
cctgtaatgccagaggatagtcacacaactcgggtaacaactggagaggatgcatcatct
cctgctgctggaaaagaatcttcagttcttgagccattgtgggatgatgaagatacgagg
gccttctatgaatgcctaccggatctcagagcttttgttcctgctgtattgctgggagaa
gctgagtctaagatcgctgaacaatcttccaagacacaagagcaaccaactgactcaaca
tctgaggctgaccaaggtcatgtggcacaagatggagcagaagcttgtgtagattctgga
ccttcgcaagatgggaaatctgatgaaaaagtgaagggtaaagaggaaagagataaggaa
aagactaaagattcagataaagacaagggaaaagaaaaggattctgaaagaaaaggagaa
actgagaaggagaaaattaaaggacttgaagggacaaatttggatgctctattgcagagg
cttcctggttgtgtgagccgtgaccttatagatcagttgactgtggagttctgttatcta
aactcaaaatctaatcgaaaaagacttgttcgtgcattattcaatgtccccagaacttct
ttggaattacttccatattattctcggatggtggctacactgtcgacatgcatgaaggat
gtttcttctatgctcctccagatgttggatgaagagtttaatttcctgataaataagaag
gatcaaatgaacatagagacaaagatcaggaacataaggtttgttggagaactatgcaag
tttagaattgcaccaggaggccttgtatttggttgtttgaaggcatgtttagatgatttc
actcatcacaacattgatgttgcttgcaatcttcttgagacatgtggacgttttctgtat
cgatctcctgagacaacagtgcgcatggcaaatatgttggagatactgatgcgcttgaaa
aatgtaaaaaatttagatcctcgccatagcaccctcgtagaaaatgcttattatctgtgc
aaaccacctgaacgatcagctcgagtttctaaagttcgtccacctttgcatcagtatatc
agaaaactacttttcacagaccttgataagtccactattgagcatgtgctgaggcagttg
cgcaagcttccctggagtgaatgtgaagactatcttctgaaatgctttatgaaggtccac
aagggaaagtatagtcaagttcacctgattgcttcacttactgctggtctgagtcgctat
catgatgaatttgcagtggcagttgttgatgaggttctggaggagatcaggttggggttg
gaattaaatgactacgggatgcagcaaaagcgcatagctcacatgcgtttcttaggagag
ctatacaactatgaacacatagattcatctgttatttttgaaactctttatttgattctt
gtctttggccatgggacaccagagcaagatgtgctcgatccaccagaagattgtttccgc
atcaggatggtcattacgcttctgcagacatgtgggcactactttgacagaggttcttcc
aaaaggaaacttgacaaattcttgatatatttccaaagatacattctcagcaaaggttca
atacctcttgatattgagtttgaccttcaggatctttttgcagatttacgcccaaacatg
acccgatattcatctattgaagaagttaatgcagctcttgtagaacttgaggagcatgag
cgtgcagtcccgactgacaaggccaacagtgagaagcactcggacactgagaatcggaag
gcaccgggtcacacaggctccaataccatctcagaaaatgggcaaagccctacaaatgaa
attgaagaaaatggtagaggtcatgtagatgcaggagacagtgagagtgactcaggaagt
gacagcattgaccgagagggtcatgatgacgaagaagagctttatgaggataaatcagag
gttcaggatgatggatgtgatagtgatgaggatgatgatgatggtggtgcaccaggtgct
tctgatgaagatgatgaagtccaagtcagacagaaaatggttgcagttgatccacaggaa
gaagctgactttgatcgggaacttaggtctataatgcaggagagcttggagtcacgcaaa
ctggagatacgtgccaggccaaccttgaatatgatgatacccatgaatgtgtttgagggg
tctactagggatcatcatggaagaagtgtcgagggggagagtggggatgagacaatggat
gaagagggtggtggagggaacaataaggatatacttgtaaaagtgcttgtgaaacgaggg
aacaagcaacaaacaaagcagatgttcattcccaagggttgctcactggtgcagagtacg
aaacagaaggaggcggcagagcttgaagagaaacaggacatcaagaggttgatattagag
tataatgacagggaagaggaggagcttaatggtgtggggtcccagacgatgaattggatg
cagacagggggaagcaggacttccacccgtggcggcacatctgatggaactggtggaagg
tcagctggagtgcggcagcggcagcattaccattcaggaggtggaggcctatattatggc
agaagaaagtga
DBGET
integrated database retrieval system
