Nelumbo nucifera (sacred lotus): 104595377
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Entry
104595377 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104595377
09122 Translation
03013 Nucleocytoplasmic transport
104595377
03015 mRNA surveillance pathway
104595377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104595377
03041 Spliceosome [BR:
nnu03041
]
104595377
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104595377
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104595377
Spliceosome [BR:
nnu03041
]
Complex C
Other components
EJC/TREX
104595377
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104595377
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104595377
NCBI-ProteinID:
XP_010254382
UniProt:
A0A1U7ZK65
A0A822Y565
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGEVRENDAYEEELLDYEEEEEKAPDSVAAKGTGEAAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSDLEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggtaagggagaacgatgcttacgaggaagagcttctcgattacgaagaagag
gaagagaaggcccctgattccgtcgcggcgaagggtaccggcgaagcagcaaagaagggc
tatgttggaattcacagttcagggttcagagatttccttttgaagccagagcttcttcga
gctattgtggattcagggtttgagcatccttcagaagtgcaacatgagtgcatccctcag
gccattttgggaatggatgtcatctgccaggccaagtctgggatgggaaaaactgctgtt
tttgttctatctactctgcagcagatcgagcctgttgctggccaagttgctgcacttgtt
ttatgccacacaagagaattagcataccagatctgtcatgaatttgagcgattcagtacc
tacttgcctgatattaaggttgctgttttttatggtggtgtaaatatcaaaactcacaag
gatttacttaaaaatgagtgtcctcacattgttgttggaacaccggggaggatattggca
ctagcaagagataaggaccttgcattaaagaatgtgaggcattttatccttgatgagtgt
gacaagatgcttgagtcattagacatgcggagagatgtacaggagattttcaagatgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagagatccgacctgtt
tgcaagagattcatgcaagatccaatggaaatatatgttgatgatgaggccaagttgacc
cttcatggtcttgtacagcactacatcaaattgagtgatctggagaaaaaccggaagttg
aatgacctccttgatgcgttggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagccgagctgaacaaattacttgtggaatgcaattttccatcaatctgcatccat
tctggaatgtcacaggaagaaagactgacacgctacaaaggattcaaggaagggcacaaa
aggattcttgttgcaacggatctggttggcagggggatagacattgaacgagttaacatt
gttatcaattatgacatgccagattctgctgatacttacttacatagggttggtagagct
ggtcgttttggcaccaagggtcttgcaattacatttgtttcatctgcttctgactctgat
gttctcaatcaggttcaggagcggtttgaggtagatattaaagagctccctgaacagatt
gatacttctacatacatgccatcttga
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