Nelumbo nucifera (sacred lotus): 104596789
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Entry
104596789 CDS
T04131
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104596789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104596789
Enzymes [BR:
nnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104596789
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104596789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
nSTAND3
AAA_22
SRPRB
FtsK_SpoIIIE
AAA_29
GTP_EFTU
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
104596789
NCBI-ProteinID:
XP_010256382
UniProt:
A0A1U8A3S5
LinkDB
All DBs
Position
Un
AA seq
447 aa
AA seq
DB search
MAYAGVLGAPGGPGLAGLSTSATTTTTRQVKLDKESELRVEVGIETPLRLRLLTGNAEIF
GTELPPEIWLCFPPRHKFAVFTWYGATIEMDGTTETDYTADETPMVSYVNVHAVLDGRRN
RAKMSSTTDPNTSQGPRVIVVGPTDSGKSTLSAMLLSWAAKQGWKPTFVDLDIGQGFITI
PGCIAATPIEMPIDPVEGIPLDMPLVYFFGHTTPSANADLYKVLVKELSRTLERQFAGNA
ESRAAGMVINTMGWIEGVGYELLLHAIDAFNANVILVLGQEKLCSMLKDVLKNKPNVDVV
KLQKSGGVVSRNAKVRQKARSYRIREYFYGLTNDLSPHSNIANFSDLFIYKIGGGPQAPR
SALPIGAEPAADPTRLVSVNINRDLLHLVLAVSFAKEPDQIISSNIAGFIYITDIDIQRK
KVTYLAPSAGELPGKFLIVGSLTWLET
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgcaggagtgctcggtgcaccaggaggtccagggctggcagggttgtcgacg
tcggccacgacaacaacaacgcggcaggtgaagctggacaaagagagcgaactaagggtc
gaggtcggcatcgaaactcctcttcgtctccggctcctcaccggcaacgctgaaattttt
ggcactgaacttcctcctgaaatttggctctgcttccctccaaggcacaagtttgctgtt
tttacttggtatggtgccacgattgaaatggatgggaccactgaaactgattacactgca
gatgagacacctatggttagctatgtaaatgttcatgctgtactggatgggcgacggaat
cgtgctaaaatgtcctcaaccactgatcccaatacttctcagggtcccagggtgattgtg
gtaggacctacagattctggaaagagtacattgtcagcaatgcttcttagctgggcagct
aaacagggttggaaacctacttttgtggatttggatattggtcagggattcataacaatt
cctggttgtattgctgcaactccaattgaaatgccaatagatccagttgaaggaattcct
cttgatatgccccttgtttacttttttgggcacacaacacccagtgccaatgcagattta
tacaaagtgcttgtaaaggagctttctcgaacccttgagaggcaatttgctggcaatgcc
gaatctcgagctgcaggcatggtgatcaataccatgggttggatagaaggtgttggttat
gagttgcttcttcatgcaatcgatgcattcaatgccaatgtaattttggttttaggtcag
gagaaactttgcagcatgcttaaagatgtactaaagaacaagcctaatgtggatgttgtg
aaacttcaaaagtcaggtggtgttgtatctaggaatgcaaaggtccgtcagaaggccagg
agctacaggataagggaatatttttatggccttacgaacgatctttccccgcattcaaac
attgcaaatttcagtgatttgttcatctataagattggtggtgggccacaggcaccacgt
tcagctctaccaattggtgcggagcctgcagcagatcctacacgattagtttctgtgaat
atcaatcgggacctgctacatttagttcttgctgtttcatttgctaaagaacctgatcaa
ataatctctagcaatattgctgggtttatctatatcacagatattgacatccagaggaaa
aaagttacataccttgccccatccgctggagaacttccaggcaaattcttaatagttgga
agtttgacatggcttgagacatga
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