Nelumbo nucifera (sacred lotus): 104597630
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Entry
104597630 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104597630
03041 Spliceosome [BR:
nnu03041
]
104597630
03036 Chromosome and associated proteins [BR:
nnu03036
]
104597630
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104597630
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104597630
mRNA cycle factors
Common to processing body (P body) and stress granule
104597630
Spliceosome [BR:
nnu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104597630
Chromosome and associated proteins [BR:
nnu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104597630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
104597630
NCBI-ProteinID:
XP_010257586
UniProt:
A0A1U7ZTC9
LinkDB
All DBs
Position
Un
AA seq
622 aa
AA seq
DB search
MRSSWADSVTNSAADTAAAGSSANNGAGSTSRPARTSYVPPHLRNRPPSSEPPAPAHSGT
SVSNDRPGYGVPPSGNRWGGPRSDLGRSGFGGGGRLGGGGGGSGWNNRAGGWDRGKEREA
NPFGDDVDAEPAFNEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIKR
CKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMNGQFAQRPHGARTV
YPLALILSPTRELSCQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPG
RLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF
PKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHAQRANGTHG
KQALTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGNTPILVATD
VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARALSEL
MQEANQEVPAWLSRYAARSSYGGGRNRRTGGRFGGRDFRRDAAAAFSRGGGGTDYYGGNI
SSGGAYGSNPGGYGGAYTSAWD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcgtgggctgattctgttacaaactctgcagctgataccgcggctgctggt
tcttctgcaaacaacggggctggtagcacttcacgtcctgcgcgaacttcttatgttcct
ccgcatcttcgtaatcggcctccttcttcagagcctcccgcaccggcacatagtggtact
tctgtaagtaatgatcgacctggttatggtgtacctcctagtgggaaccgttggggtggt
cctaggtctgatttggggcggtctgggtttggtggcggtggacgccttggtggtggcggt
ggtggtagtggttggaataacagagctggtggatgggatcgtggaaaagaacgcgaggcg
aacccttttggggacgatgtcgatgcagaacctgctttcaatgagcaggaaaatactggc
attaactttgatgcctatgaagatatcccggtggagacaagtggggaaaatgtcccgcca
cctgtgaatacttttgcagagatcgacttgggggaagcacttaatcaaaacataaaaaga
tgcaaatatgtcaagcctacacctgtgcagcgtcatgccatcccgatttctcttgcaggg
agggatctgatggcatgcgctcagactgggtctggcaagacggctgctttctgcttcccg
attattagtggaattatgaatggacagtttgcacagagacctcatggtgcaagaacggtg
tatccacttgctcttattctgtctcctacgagggagctatcatgccagatacatgaggaa
gccagaaagttttcttatcaaactggtgtcagggtggttgttgcttatggaggggcgccc
atcaaccagcagctgcgggacctggagaggggtgttgatattcttgtagcaacaccagga
cgactggtagatttactggagagagctagggtttcactacagatgatcaggtacctagct
ctagatgaggcggatcgaatgcttgacatgggttttgagccacagattagaaagattgtg
gaacaaatggacatgcctcctcggggcgtaagacaaacaatgctcttcagtgccaccttc
ccaaaagagatacagagattggcctctgatttcctttcaaattatatatttttggctgtt
ggaagagttggttcaagtactgatttaattgtccaaagagtagaatttgttcttgaatcg
gacaagagaagccacttgatggacctccttcatgcacagagggcaaatggaacacatgga
aagcaagctctgactttggtttttgtggagacaaagaaaggagctgattcattggaacac
tggttgtgcatgaatgggtttcctgcaactacaatccatggcgacagaacacagcaggaa
cgagaacaagcattgaggtcattcaagagtggcaataccccaatcctggtggcaacagat
gtggcagcacgtggtttagatataccccatgttgcacatgtggtcaacttcgatctcccg
aatgacattgatgactatgtacatcggatagggaggacagggcgagcaggtaagacagga
ctggctactgccttcttcaatgagaacaattcctcgttggcaagggcactatctgaattg
atgcaggaagcaaaccaggaagttcctgcttggctctctcgttatgctgccaggtcttct
tatggaggggggaggaaccgacgtactggtggtcgttttggtggtcgtgacttcaggagg
gatgctgctgctgctttcagtaggggtggaggtggtactgattattatggtggaaacatc
agcagtggtggtgcatatgggtctaaccctggcggatatgggggtgcatatacaagtgcg
tgggactag
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