Nelumbo nucifera (sacred lotus): 104597938
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Entry
104597938 CDS
T04131
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03030
DNA replication
nnu03420
Nucleotide excision repair
nnu03430
Mismatch repair
nnu03440
Homologous recombination
nnu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104597938
03420 Nucleotide excision repair
104597938
03430 Mismatch repair
104597938
03440 Homologous recombination
104597938
03460 Fanconi anemia pathway
104597938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nnu03000
]
104597938
03032 DNA replication proteins [BR:
nnu03032
]
104597938
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104597938
Transcription factors [BR:
nnu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104597938
DNA replication proteins [BR:
nnu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104597938
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104597938
MMR (mismatch excision repair)
104597938
DSBR (double strand breaks repair)
HR (homologous recombination)
104597938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
104597938
NCBI-ProteinID:
XP_010258039
UniProt:
A0A1U7ZUH6
LinkDB
All DBs
Position
Un
AA seq
630 aa
AA seq
DB search
MGKSITPDAVSSILANPSPDSPSDVAETIVQVVDLKQVGNRFTFMASDGRTKVKAILPSN
LSAEIESGNIQNLGLIRILDYTLNVIPNKSEKYLIVTKCEVISPALETEIRSEVKKEEAG
IILKPKEEIVVKSEIGSEIKREQTGILLKPKQEIVAKSAAQILHEQHGNMAPTARLAMTR
RIHPLVSLNPYQGNWTIKVRVTNKGIMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDA
AKKFFDKFELGKVYYISRGTLKVANKQFKTVENDYEMTLNENSEVEEAAGEKAFVPETKF
NFVPIDQLGPYVNGKEFVDIIGVVQNVSPTLSVRRKSNNENIPKRDITIADESKKTVVVS
LWNELATNVGQELLDMAETSPIVALKSLKVGDFQGVSLSSLNRSVVLVNPDIPESKKLKS
WYESEGKGTAMDSVGSGLISSTKNGTRSMYSDRVFLSHITSNPSLGEDNKPAFFSIKAYV
SFVKPDQPMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECSLRYIMVMKVSDPSGEAWL
SVFNEQAEKIIGCSADELDGMKSQIGEGNTYQLKLKEATWVPYLFRVSVTLNEYMNEKKQ
RITVKYHAPLDFAAESRFLLEEISKMQQAS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggggaaatccatcaccccagatgccgtttccagcatactggcaaacccttctcccgat
tctccctctgatgttgcggaaaccattgttcaagtcgtcgatctcaagcaagtcggcaac
agatttacatttatggctagcgatggaaggactaaggttaaggcaattcttccgtccaac
ttgtcagctgagatcgagtcgggaaatatccagaaccttgggctcatccgtattcttgat
tacaccctcaacgtcattcctaacaaatctgagaagtatttgattgtgaccaaatgtgaa
gttatttctcctgcacttgaaactgagatccgtagtgaggttaaaaaggaagaagctggc
attatattgaaaccaaaggaagaaatagtggtcaaatcggagatcggaagtgaaataaag
agagaacaaactggcatcttattgaagccaaagcaggaaatagtagccaaatctgctgca
cagattctgcatgaacagcatggaaacatggctcctactgcgcgattggccatgacacga
aggattcatcctcttgtttccttgaatccttaccaaggcaattggactattaaggttcgg
gttacgaataaaggcatcatgcggacttacagaaatgctagaggggaaggctgcgtcttc
aacgttgagttgactgatgaagatggtacacaaatacaagcaacaatgttcaatgacgct
gcaaagaagttctttgacaagtttgaattgggaaaggtttattacatttcccgaggaact
ctaaaggtagctaacaagcagtttaagacggtcgaaaatgattacgagatgaccttgaat
gaaaactctgaggtggaggaagcggccggagagaaggcttttgttcctgaaacaaagttc
aactttgttccaattgatcagctaggtccctatgttaatgggaaggaattcgtcgatatt
atcggagttgtccaaaatgtttctccaaccttgagtgttcgaaggaagagcaacaatgaa
aatatcccgaagcgtgatataacaattgctgatgaatcaaagaagactgttgtggtatct
ctctggaatgaacttgctaccaatgtggggcaggaattgctggacatggcggaaacttct
cccattgtagcattgaaaagccttaaagttggagatttccaaggtgtgtctttatcatct
ttgaatagaagtgtcgtgcttgtaaatccagatataccagaatcaaagaagctgaaatct
tggtatgaatctgaaggtaaagggactgcaatggattctgttggctctggtctgatctct
agtacaaagaatggaacgaggtctatgtattctgacagagtcttcctttcgcatattacc
agtaatccatccttgggtgaggataataagcctgcgtttttcagcataaaagcttatgtc
agtttcgtcaagcctgatcagccaatgtggtaccgggcttgtaagacatgtaacaagaaa
gtgactgaagctattggatctgggtattggtgtgagggatgtcagaagaacgatgaggaa
tgcagcttgagatatataatggtaatgaaggtgtctgatccaagtggggaggcttggctt
tctgttttcaacgaacaagcagagaaaataattggatgttctgcggatgagcttgatggg
atgaaatcacagattggagaggggaatacatatcaattaaaactcaaagaagctacatgg
gttccctatctatttcgagttagtgtcacactgaatgaatacatgaacgagaaaaaacaa
aggataacagttaaatatcatgctcctcttgattttgctgctgaatcaagatttctgttg
gaggagatttctaagatgcaacaagcgtcttga
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