Nelumbo nucifera (sacred lotus): 104598235
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Entry
104598235 CDS
T04131
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104598235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nnu04131
]
104598235
Membrane trafficking [BR:
nnu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104598235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
zf-HC5HC2H_2
TPR_2
Motif
Other DBs
NCBI-GeneID:
104598235
NCBI-ProteinID:
XP_010258480
UniProt:
A0A1U8A918
A0A822ZAW0
LinkDB
All DBs
Position
Un
AA seq
1003 aa
AA seq
DB search
MVHNAFDSFQLLRNCPAKIECAASYGSKLLLSCTDGSIRIYAPESSTSSDGHSSPPDRGK
AGILREPYVLEKAVMGFWKKHAISMEVSVSRNILISLSDSIAIHRIPNLEAVMVIPKSKG
ATVFAWDDRRGYLCFGKQKRVGIFRQEAARDFVELHEFGVPDSVKSISWCGENICLGIRR
AYMILNTTNGMVSEVFPSGRIQAPLVVLLPSGELVLGKDNIGVFVDQNGKLLQEGKICWS
EAPTSMVIHIPYAIAQLPRHIEIRSVGAPHPLVQIISLHDVRFLIRSNNGILVVLDSSIY
GLLPVPLGAQIIQLTASGNFEEALALCKSLPPEDSTLRAAKEGSIHIRYGHYLFDNGNYE
EAMEQFLASSVDVTYVLALYPYMALPKTLSIPDTDKVVYFASDTLDHCRISSNVSDIMES
SSPSHLCESNEKEVLESKKMSHDALIALVKLLQKKRFCIIERATAEGTDEAVSDAVDDSI
KSCKSSRLKNSGKSHGHIHISSGARDMAAALDTALLQALLLTGQSSVALDLLKGPNYCDV
KICEEFLQKRNYNSELLELYKGNNLHREALKFLNQLVEELSLCQPQSGPTQTFTPEMIIK
YLKPLCATDPMLVLEYSTFVLQSCPAQTIELFLSGNLSADLVNSYLKQNAPRMQATYLEL
MLSMNENRISTNLQNELVLIYLAEVLDWHAEITIEHMWDEKAYSPIRKKLLSALEGISGY
NPEVVLKRLPADALYEERAILLGKMNQHQLALALYVHKLQCPELALAYCDRVYDVGQHQP
SKPCGNIYLTLLQIYLNPWRTTKEFERQTMNLVSAQSTGSQKVGSAKAKVGRGAKKIAEI
EGAEDLRFSPSGTDSGRSDGEGDEPSQEGAFIMLEEALDLLGRRWDRVNGGQALKLLPRE
IKLQDLAPFLEPLLKKSSESHRNFSVINSLRHSQNLQVKEELYKQRRTFIMISSDSMCSL
CNKRIGTSVFAVYPNGKALVHFVCFRDSQIIKAVRSSPIQKCG
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacaacgccttcgattcgtttcagttacttagaaactgcccagcgaagatcgaa
tgcgctgcgtcgtacggttcaaagctcctcctcagctgcaccgacggctctataagaatc
tatgctccagaatcctcaacttcgtccgacgggcactcttcgccgcctgatcgtggtaaa
gcgggaattctccgtgagccctacgttctggagaaggctgttatgggattctggaagaag
catgcaatttcaatggaggtgtctgtgtcgagaaacattctgatttcgttatcggattct
attgctattcacaggattccgaatctagaagcagtcatggtgataccgaagtcgaagggg
gcgactgttttcgcatgggacgatcggagagggtacctgtgcttcggaaagcagaagagg
gtgggcattttccgccaggaggcggcaagggactttgtggagttgcatgagtttggagtt
cctgattcagtgaagtcaatttcttggtgtggtgagaatatatgcttggggattagaagg
gcatatatgatactgaacaccacgaatgggatggtgtctgaggtattcccttcagggcgg
attcaagcacctttggttgtccttcttccttcaggggagcttgttttgggaaaggataat
attggagtttttgttgaccaaaatggaaagcttcttcaagaaggcaagatatgttggtct
gaagcccctacatccatggtcatccacataccgtatgcaattgctcagttaccaagacat
attgagatacgatctgttggagctccacatccattggtacaaataatttctctccatgat
gttcgttttcttattcgaagcaacaatggtattttagttgtattggatagttccatatat
gggcttctacctgttcctcttggtgcgcagataatacaattaactgcatctggcaacttt
gaggaggccttggctttgtgtaagtcacttccaccagaggattcaactcttcgagctgca
aaggaaggctctatacacatccggtatggacactatttgtttgataatgggaattatgag
gaggctatggaacaatttttggcatcatcagtggatgttacctatgtgctggctctctat
ccatatatggctcttcccaagacactttctatacctgatacagataaagtggtttatttt
gcatcagatacattagatcactgtcgaatttcctcaaatgtttcagatataatggagtca
tcatccccatcccacctgtgtgaatctaatgaaaaggaagtgcttgagtcgaagaaaatg
agccacgatgctcttattgctcttgttaagcttttgcagaaaaagagattttgcataatt
gagagggccactgctgagggaacagatgaggctgtatctgatgctgttgatgacagtatt
aaatcgtgcaagtccagtagattaaagaattcaggaaagagccatggtcacattcatatc
agctcaggtgctagggatatggcagctgcacttgatactgcactcctccaagctcttctt
cttactgggcagtcctcagttgcattagatcttctgaaaggccccaactattgtgatgta
aaaatatgtgaagaattcctacagaagagaaactataattcagaattgttagaactatac
aaaggcaacaacttgcaccgtgaagctctcaagtttcttaaccaactggttgaggaatta
agcctatgccaaccacagtctggacctacccagacatttactcctgaaatgattatcaag
tacctcaagcctctttgtgcaactgatccaatgcttgttttggaatattcaacatttgtt
cttcaaagctgtccagcacaaacaattgagctctttttgtctggaaacctctcagcagac
ttggtcaattcatacttaaagcagaatgcaccaaggatgcaagctacatatttagagctt
atgctgtcaatgaatgagaatagaatctctacaaatttgcaaaatgaactggtgctaatc
tatcttgccgaagtacttgactggcatgcggaaataactattgaacatatgtgggatgag
aaagcctattcccccatcagaaagaagctattatctgctttagagggcatatctggatac
aacccagaggtggtgttgaagcgcctaccagcagatgctttatacgaggagcgtgcaatt
ttattggggaagatgaatcaacatcagcttgctttggctttgtatgttcataagcttcaa
tgtcctgaattggcacttgcatattgcgaccgagtttatgatgttggacaacatcaacct
tcaaaaccatgtggtaacatatatttgacacttctgcaaatatatctaaatccttggaga
acaacaaaggaatttgaacgacaaaccatgaatctagtgtctgctcagagtactggcagc
cagaaggttggatcagccaaagctaaagttggccgtggagctaaaaaaattgctgagata
gaaggtgcagaggacttacgattcagtcccagtggcactgatagtgggcgaagtgatggt
gagggagatgaaccaagccaagaaggagctttcattatgcttgaagaagccctagatctt
ttgggacgaaggtgggatagggtcaatggaggtcaagccctcaaactcttgccaagggag
ataaagttgcaggacttggctccatttcttgagccacttctgaagaagtctagtgagagt
caccgtaacttctcagttatcaatagcttaagacacagccagaacttgcaggtgaaggaa
gaactttataagcaacggagaacattcataatgatttctagtgatagcatgtgctctctt
tgcaacaaaagaatagggactagtgtttttgctgtatacccaaatgggaaagcgcttgtg
cactttgtttgtttcagagactcacagattatcaaggcagttcgaagctcgccaattcag
aagtgtgggtag
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