Nelumbo nucifera (sacred lotus): 104601728
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Entry
104601728 CDS
T04131
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03015
mRNA surveillance pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104601728
09123 Folding, sorting and degradation
03018 RNA degradation
104601728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104601728
03041 Spliceosome [BR:
nnu03041
]
104601728
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104601728
mRNA cycle factors
Stress granule specific factors
104601728
Spliceosome [BR:
nnu03041
]
Complex C
Other components
Complex C specific factors
104601728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RBD_DGKtheta
RRM_MARF1
DUF5062
SET1_RBD
BRAP2
Motif
Other DBs
NCBI-GeneID:
104601728
NCBI-ProteinID:
XP_010263472
UniProt:
A0A1U8A9S3
LinkDB
All DBs
Position
Un
AA seq
653 aa
AA seq
DB search
MAQVQVQPQPPPLSGPNGPANSGGNQFVSSSLYVGDLEFNVTDSQLYDLFSQLGQVVSVR
VCRDLSTRRSLGYAYVNFSNIQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTANI
FIKNLDKAIDNKGLHETFSTFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAINKLNG
MLINDKQVYVGPFLRKQERESVINKAKFNNVFVKNLSEATTDEDLKKIFGEYGTITSAVV
MRDGDGKSKCFGFVNFENSDDAANAVEALNGKKFDEKEWYVGKAQKKSEREQELKGRFEQ
SMKEAVDKFQGVNLYVKNLDDSISDEKLKELFSEFGTITSCKVMRDPNGISKGSGFVAFT
TPEEASRALAEMNGKMVVNKPLYVALAQKKEDRRARLQAQFSQMRPVAMSPSVAPRVPMY
PPGGPGLGQQIFYGQGPPTLIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQR
TGGRRAGAGPVQQSQQPVPLIQQQMLPRGRVYRYPPGRNMPDVPMSGVAGGMLSVPYDMG
GMPLRDAAMSQPIPIGALATALANATPEQQRTMLGESLYPLVDQLEHDMAAKVTGMLLEM
DQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQANSPTDQLASLSLNDNLVS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcaggtccaaccacagcctcctcctctctctggtccgaatgggccggcc
aacagtggtggcaatcagttcgtctcgtcgtctctgtatgttggagatcttgaattcaac
gtcaccgactcgcagctctacgatctgttcagccaactcggccaggtcgtgtcggttcgt
gtttgcagggacttgagcactcgacgatcccttggttatgcctatgtcaattttagcaac
atccaagatgcggcaagggctttggatgtacttaacttcactcctctcaatggaaaaccc
atccgcattatgtattctcatcgtgatcctagcattcgtaaaagtggaactgctaatata
tttatcaagaatctggacaaggcaattgacaacaagggtcttcatgaaactttttccaca
tttgggaacattctgtcttgcaaaatagctactgatccttctggccagtcaaaagggtat
ggatttgttcaatttgacaatgaggagtctgcacaaaatgccataaataagctcaatggc
atgctgataaatgataaacaagtctatgttggaccattccttcgtaagcaagagagggaa
tcagtgataaacaaggcaaaattcaataatgtttttgtaaaaaatctctcagaggcaacc
actgatgaagatttaaagaaaatatttggtgaatatggaacaattactagtgcagtagtg
atgagggatggggatggtaaatccaagtgttttggatttgttaactttgagaattcagat
gatgctgctaatgctgttgaagcacttaatggaaagaaatttgatgagaaagagtggtat
gtaggaaaagcacagaaaaaatctgaaagagagcaagaattgaaagggagatttgagcag
agtatgaaggaagcagttgacaaatttcaaggtgttaacttgtatgtgaagaacttagat
gatagcattagcgatgaaaaactgaaggaattattttctgagtttggcacaattacttcg
tgcaaggttatgcgagatccaaatgggataagcaaaggttcagggtttgttgcctttaca
actccagaagaagcatctcgagctctagctgaaatgaatggcaaaatggttgtcaataag
cctctttatgttgcactggcacagaaaaaagaagatagaagagcaaggctgcaagcacaa
ttttcacaaatgcggccagttgcaatgtcaccttctgttgctcctcgcgtacccatgtat
ccccctggtggtccaggtcttggacaacaaatattttatggtcaaggaccaccaacactc
attcctcctcagcctggatttggttaccagcagcagcttgttcctggaatgaggcctggt
ggggctccaatgccaaatttctttgtaccattagttcaacaaggccagcagggacaacga
actgggggcagacgtgccggggcagggcctgtacaacaaagccagcaaccagtgccttta
attcagcagcagatgcttccgagggggcgtgtataccgttacccacctggtcgtaacatg
cctgatgttcccatgtcgggagttgctgggggcatgctttctgttccatatgacatgggt
ggcatgccattgcgagatgctgcaatgtcacagcctattcctattggggctttggctact
gcccttgcaaatgcaacaccagagcaacagagaacgatgctcggtgaaagtctttaccct
ctagtggatcagctggagcatgatatggcagccaaggtgacaggcatgctcctggagatg
gaccagactgaggttttgcatttgctggagtcacccgaagccttgaaagcaaaggtggct
gaagcgatggaagttctgaggaatgttgctcagcaacagcaggctaacagcccaaccgat
caattggcttctctttctcttaatgataaccttgtttcctaa
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