Nelumbo nucifera (sacred lotus): 104604309
Help
Entry
104604309 CDS
T04131
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03020
RNA polymerase
nnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104604309 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
104604309 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nnu03021
]
104604309 (RPB1)
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104604309 (RPB1)
Enzymes [BR:
nnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104604309 (RPB1)
Transcription machinery [BR:
nnu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104604309 (RPB1)
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104604309 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
104604309
NCBI-ProteinID:
XP_010266907
UniProt:
A0A1U8AIB7
A0A822ZT22
LinkDB
All DBs
Position
Un
AA seq
1848 aa
AA seq
DB search
MDTRFPYSPAEVSKVRRVQFGILSPDVIRQMSVVQIEHSETTEKGKPKPGGLSDTRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQAQRIRNPKNRLKKVLDACKNKTKCEGGDEIEVQGQDTGEPIKKRRGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCILLGLNPEYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIERGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMRKSEFDKVFRYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQ
LGTEIATTGDNNWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP
EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDC
LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP
YNEGMMSPSYLLSPNARLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PPSAKYSPSLAYSPSSPRLSPSSPYSQTSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPFN
SGISPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQLSNKDEGSTR
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgatttccatactccccagcggaggtctccaaagtccgccgggttcagttt
ggtatactcagccccgacgtgatcaggcaaatgtcggtggtgcagatcgagcacagcgag
acgaccgagaagggtaagccgaagccaggtggtttgagcgacactcgtctcggtacaatt
gaccgaaagatgaagtgtgagacctgtatggcgaacatggcggagtgccctgggcacttt
gggcacctggagctcgccaagcccatgttccatatcggtttcatgaagactgttctcagt
attatgcgctgcgtctgcttcaattgctctaaaattctcgccgacgaggaagatcacaag
ttcaagcaggctcaaagaattagaaatccaaagaacaggctaaagaaggttttggatgcc
tgtaagaataaaactaaatgtgaaggtggtgatgaaattgaggtccaaggacaagacact
ggagaaccaattaaaaagaggcgagggggttgtggtgctcaacagccaaagcttactatt
gaaggtatgaaaatgattgcagagtacaaggctcagaggaagaaaaatgatgaccaggaa
cagcttcctgaacctgttgaaagaaaacaacagctttctgcagaaagggttctaagtgtt
ctgaagaggataagtgatgaagactgcatattgttaggtttgaatcctgaatatgctcgc
cctgattggatgatactacaagttcttccaattcctccgcctcctgttagaccgtctgtg
atgatggatacttcatccaggagtgaggatgacttgactcatcagttggcaatgatcatt
agacacaatgagaatctgaggagacaggagagaaatggagctcctgcacacatcatctca
gaatttgcacaattactgcagttccatatagccacatattttgataatgagctgcctggc
cagccaagggccacacagcggtcagggcgaccaattaaatcaatatgtagtaggctgaag
gctaaggagggtcgcataagaggtaacttaatgggaaagcgtgtcgatttttcagcacgg
actgtcatcacacctgatccgaccattaatattgatgaattgggagttccttggagtatt
gctttaaacttgacatatccagagactgtgacaccatacaacattgaaaggttgaaagaa
cttgttgaatatggacctcatccgccacctggtaaaactggtgccaagtacatcataaga
gaagatggacagaggcttgatcttcgctacttaaagaaaagtagtgatcatcatttggag
cttggatacaaggtggaacgacacttacaagatggggactttgttctattcaaccgacaa
cctagtcttcacaaaatgtccattatgggacacagaatcaagattatgccctactcgaca
ttccgcttgaacttgtctgttacttctccatataatgctgattttgatggagatgagatg
aacatgcatgttcctcaatcatttgaaacaagggcagaagtcttggagctaatgatggtg
ccaaagtgcattgtgtcaccccagtcaaatcggcctgttatggggattgtccaagataca
cttttaggatgccgtaagatcactaaaagggatacttttatagagaaggatgtcttcatg
aacattttgatgtggtgggaggattttgatgggaaaattcctgctcctgcaattctgaaa
cctagacccctttggactgggaaacaagtatttaatcttataattcctaagcagataaat
ctcatgaggacatcggcttggcactctgaatctgaaacaggatttataaccccaggagat
actcaagttcgaatagagaggggggagcttcttacaggcactctttgcaaaaagaccctt
ggaacatctactggtagtcttattcatgtgatctgggaagaagttggaccagatgctgct
cgcaaatttcttggtcacacacaatggcttgttaattattggcttctgcagaatggtttc
agtattggaattggagatacaattgctgatgctgctactatggaaaaaattaatgagaca
atttctaaagcaaaaaatgaagtgaaagaacttattagggctgcccaagaaaggcaattg
gaggctgaacctggacgaactatgatggaatcatttgaaaatagagtgaatcaggtgttg
aataaagctcgtgatgatgctggaagtagtgcacagaagagcttatctgaaagtaacaat
cttaaggctatggttactgcagggtcaaagggaagtttcattaatatttcacaaatgact
gcttgtgtcggacaacagaacgttgagggtaagcgaatcccatatgggttcattgatcgg
acattgccccatttcactaaagatgactatggacctgaaagtcgtggctttgtggaaaac
tcatatttgcgtgggttgaccccacaagagttcttttttcatgccatgggtggtagggaa
ggattgattgatacggctgtaaaaacttctgagactgggtacatccagaggcgacttgtg
aaggctatggaagatattatggtcaaatatgatggaactgtcaggaattcattgggggat
gttattcagtttctctatggtgaagacggtatggatgctgtatggattgagacacagaaa
ctggactcgttgaaaatgaggaaatccgagtttgataaagtttttagatatgaaattgat
gatgagaactggaacccaagttacatgttaccagaacatgttgaggatctgaaaaccata
agagagttccggaatgtgtttgatgcagaagttcaaaaattggaagcagatcgataccag
cttggcacagagattgcaaccactggtgataataactggcccatgcctgtgaaccttaag
aggttgatttggaatgcacagaagacttttaaggtggacctgagaaggccgtctgatatg
catccaatggagattgttgaagctgttgataaactccaggagagactgaaggttgttcct
ggtgatgattttctgagcatggaagctcaaaagaatgccactctcttcttcaacatcttg
cttcgaagcacatttgccagcaagagggtgttgaaagaataccggcttactcgtgaagca
tttgagtgggttattggtgagatagaatctcgtttcttacagtcattagttgccccagga
gaaatgattgggtgtgttgctgctcagtccattggtgaacctgccactcagatgactttg
aataccttccactatgctggtgttagtgcgaaaaacgtcactctgggtgttcccaggttg
agggaaattattaatgtggcgaagaaaattaagactccttcactgtcagtctacctgaag
cctgaagtaaacaagacaaaggaaagggccaagaatgtccaatgtgccctggagtacact
actttgcggagtgtgacacaggctactgaagtatggtatgatccagaccccatgagcacc
ataattgaagaggatgttgattttgtaaagtcctactatgaaatgccagatgaagaggtt
gctcctgagaagatttctccctggctgcttcgtatagagttaaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaatcttgagtttgatgatgat
ttgacatgtatatttaatgatgacaatgctgaaaagcttattcttcgtatacgtataatg
aatgatgaagctcccaagggggaattgcaggatgaatctgctgaagatgatgttttccta
aaaaagatagaaagtaacatgctgacagaaatggcccttagaggcattccagatatcaac
aaggtgttcatcaagtcaggaaaggtaaataagtttgatgaaagtgagggattcaagcca
gaggttgagtggatgctggacactgaaggtgtcaatcttttagctgtcatgtgccatgaa
gatgttgatgccacaaggacaacaagcaaccacttgattgaagtgattgaagttcttggt
atcgaggctgttcgtcgtgctttgctggatgaattgcgagttgttatatcttttgatgga
tcttatgtgaactacaggcaccttgctattctttgtgacaccatgacctaccgaggtcac
ttaatggccatcactcgtcatggtattaatcgaaatgatacaggaccaatgatgagatgc
tcatttgaggaaactgtggacatccttctggatgctgccgtgtatgccgagacagattgc
ctcaggggtgttactgaaaatatcatgctaggtcagcttgctcctattggcactggagat
tgtgccctgtatttgaatgatcagatgctgcagcaagccattgaactccaacttcctagt
tatatggaaggcctggactttggcatgacaccttcacgatcccccattatgggaactcca
tataatgagggaatgatgtctccgagttatttgctcagcccgaatgctcgtctttcaccc
attaccgatgctcaattttctccttatgttggtggaatggcattctcccctacttcatcc
ccaggctacagtccatcttctccaggctacagtccatcctctcctggttatagtcctacc
tcccctggttatagtcctacctctcctggctatagtcctacttcacctggttatagtccc
acatccccaacatacagtcctagctctcctggttacagtcctactagtcctgcatattct
cctaccagtccatcttactcccccacttcacctagttatagccctacatctcccagctat
agtcctacgtctcctagttatagtcctacatctccaagttatagccccacttctcctagt
tacagccctacttcacccagctacagccccacttctccagtctatagtcctacttctcct
gcttatagccctacttctcctgcttatagtccaacttcaccatcatacagcccaacctca
ccatcgtatagcccaacctcaccatcgtatagcccaacctcaccttcttacagcccaacc
tctccatcatacagcccaacctctcctgcttatagcccaacttctcctggctacagtcca
acctccccaagctacagcccaacctcaccaagctacagtcctacttctccaagttacaat
cctccatcagcgaagtacagtccttcactggcatattctccaagcagtcccagactgtca
ccatccagtccatatagtcagacatctccaaactacagcccaacatcaccgtcatattca
ccaacatcaccatcttattcgcctccaagccccacttacagtcccagcagcccattcaat
tctggtatcagcccagactacagcccaagctctccacagtacagcccaagtgcggggtac
tcgccaacagcaccaggatactcaccttcatctaccagtcagtacacccctcagcttagc
aacaaggacgaggggagcactcgttga
DBGET
integrated database retrieval system
