Nelumbo nucifera (sacred lotus): 104604418
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Entry
104604418 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104604418
09122 Translation
03013 Nucleocytoplasmic transport
104604418
03015 mRNA surveillance pathway
104604418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104604418
03041 Spliceosome [BR:
nnu03041
]
104604418
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104604418
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104604418
Spliceosome [BR:
nnu03041
]
Complex C
Other components
EJC/TREX
104604418
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104604418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104604418
NCBI-ProteinID:
XP_010267037
UniProt:
A0A1U8AHB2
A0A823A1S2
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGETRENEAYEEELLDYEEEEEKAPDSIGAKGTGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKEMLKNECPHIVVGTPGRILA
LARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagaaaacgaggcatacgaagaagagcttctcgactacgaggaggag
gaggagaaggctccggattccattggagcgaaaggcaccggcgaatcggcaaagaaaggt
tacgttggaattcacagttctggatttagagattttcttttgaagcctgagctccttcga
gctattgtagattcaggatttgagcacccttcagaagtgcaacacgagtgcatccctcag
gccatcctagggatggatgtcatctgccaagcaaagtctgggatgggtaaaactgcagtg
ttcgtcctctctaccctgcagcaaattgagcctgttgctggtcaagttgctgcgcttgtt
ttatgccatacgcgggagttggcttaccagatttgtcatgaatttgagcgtttcagcaca
tatttgcctgaccttaaagttgctgtcttctatggtggtgttaatatcaaaatccacaag
gaaatgctcaagaatgagtgtcctcatattgtggttggcacgcctggaagaatacttgct
ctagctagagacaaagaccttgcattgaagaatgtgaggcatttcatccttgatgaatgt
gacaagatgcttgaatcacttgacatgcggagagatgtgcaagagattttcaagatgact
cctcacgataagcaagtgatgatgttttctgcgacactcagcaaggagattcgccctgtc
tgcaagaaatttatgcaagatccgatggaaatttatgtagatgatgaagccaagttgaca
ctacatggtcttgtgcagcactacatcaaactgactgagtcagaaaagaaccgcaagttg
aatgatctgcttgatgcattggatttcaatcaagtagttatatttgtcaaaagtgttaac
agagcagctgagctgaacaaattacttgtggagtgtaacttcccatccatctgcatccat
tctggaatgtcacaggaagaaaggttgacacggtacaagggtttcaaggaggggcacaaa
aggattcttgtggcaacggatttggttggcaggggaatagatattgaacgtgtaaacata
gttatcaattatgacatgcctgattctgctgacacatatttacatagggttggtagggct
ggtcgttttgggaccaagggacttgcaatcacttttgtatcatctgctgctgactctgat
gttcttaatcaggttcaagagaggtttgaagtggacataaaagagctcccagagcaaata
gatacatccacatacatgccatcatga
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