Nelumbo nucifera (sacred lotus): 104605025
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Entry
104605025 CDS
T04131
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104605025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nnu03041
]
104605025
03009 Ribosome biogenesis [BR:
nnu03009
]
104605025
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104605025
Spliceosome [BR:
nnu03041
]
Complex A
U2 snRNP components
U2 related factors
104605025
Complex B
104605025
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104605025
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
90S particles
Helicases
104605025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
ABC_tran
T2SSE
Flavi_DEAD
AAA_7
AAA_30
PhoH
AAA_33
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
104605025
NCBI-ProteinID:
XP_010267917
UniProt:
A0A1U8AXX7
LinkDB
All DBs
Position
Un
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISAKIVKSNGGLAHNSGINRWNGRPYTPRYYEILEKRKTLP
VWQQKDEFLRVLRDNQVIILVGETGSGKTTQIPQFVLESVDIETPDKRRKMMIACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMTDPLLERYK
VIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIANL
GDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPCGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNTDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNL
TKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKAADNVRQQLVRIMARFNLKL
CSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKRDKDREESK
NRK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagaggaagagaaaggtgagcttattcgatgtggtggatgagacttcaatc
tctgccaaaatcgttaagagtaatgggggcctagcgcacaactcgggcattaacagatgg
aatggccggccttacacgccaagatactatgaaatcctggaaaagagaaagacgctcccg
gtttggcagcagaaagacgagtttctgcgagttttgagggataaccaggtcataatcttg
gttggagaaaccggtagtgggaagaccactcagattcctcagtttgttttagagtctgtt
gacatagagactccagataagcgcagaaagatgatgatagcttgcacccagccccgtaga
gtggcagcaatgtctgtttcccgtagagttgcagaagagatggatgtgactattggagaa
gaagttggttacagcattcgatttgaagattgtagtagttcaaaaactgttctcaagtat
ctgacagatggtatgcttttaagagaagccatgactgatccactcctagaacgctataaa
gtaataattcttgatgaagctcatgaaagaactttggcaacagatgttctatttgggctt
ctgaaggaagtactgaaaaacagacctgatttgaaactggtggtgatgagtgcaactctt
gaggccgaaaaatttcagggttatttttatggggcaccacttatgaaagtacctggaagg
cttcatccagtggagattttttacacacaggagccagagagggattaccttgaagctgct
attcggacagtagtgcaaatacacatgtgtgagccctctggtgacatacttgtcttcctt
actggagaagaggagattgaagatgcatgtcggaaaattacaaaggaaattgcaaatttg
ggtgatcaagtagggcctgtcaaagctgtgccactgtattctacacttcccccagctatg
cagcagaagatatttgagcctgccccacctccactgaaggagggtggtccttgtgggagg
aagattgtggtgtcaaccaacattgcagaaacttcccttaccatagatggtatagtttat
gttattgaccctggatttgcaaagcaaaaggtttataatcctcgagtgcgtgttgaatct
ttgctggtctcaccaatatcaaaggcaagtgcccaccagagatcaggacgtgctggaaga
acacaaccaggaaaatgctttagactctacactgagaagagttttaatactgatcttcag
ccacagacatatccagaaatactgcggtcgaatcttgcaaataccgttctcacattgaag
aaactaggaattgatgatcttgttcattttgattttatggatcctcctgcaccagagaca
ttgatgagagcattggaggtactgaactacttgggtgcactggatgatgatgggaacttg
acaaagttgggagaaatcatgagtgaatttcctttggatcctcaaatgtcaaagatgctt
gttgttagtcctgaatttaattgctcaaacgagatcttatctatttctgcgatgctatca
gtacccaattgctttgtccggcctagggaggcgcagaaagctgcagatgaagctaaagct
cggtttggccacatcgatggggatcaccttacgcttttgaatgtgtatcatgcatataag
caaaacaatgaagatccttcatggtgttatgagaactttgtcaatcatagagcactcaag
gctgctgataatgtgaggcaacagcttgtacgtatcatggcccgattcaatctgaagcta
tgcagcacagatttcaacagccgtgactattacgtcaatataagaaaagccatgctggct
gggtatttcatgcaggtagctcaccttgagcgtactggccactatttgacggtgaaagat
aaccaggtggttcatcttcatccttcaaactgcttggatcacaagccagagtgggtcatt
tacaatgagtatgtcttgaccagcagaaatttcattcgtacagttacagatgttcgtggt
gaatggctagttgatatagcaccccactactacgatcttgctaatttcccccagtgtgaa
gctaagcgtgttcttgaaaggctctacaagaagcgagataaggatagggaggaaagcaaa
aataggaaataa
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