KEGG   Nelumbo nucifera (sacred lotus): 104605803
Entry
104605803         CDS       T04131                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03030  DNA replication
nnu03410  Base excision repair
nnu03420  Nucleotide excision repair
nnu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104605803
   03410 Base excision repair
    104605803
   03420 Nucleotide excision repair
    104605803
   03430 Mismatch repair
    104605803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nnu03032]
    104605803
   03036 Chromosome and associated proteins [BR:nnu03036]
    104605803
   03400 DNA repair and recombination proteins [BR:nnu03400]
    104605803
DNA replication proteins [BR:nnu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104605803
  DNA Replication Termination Factors
   ELG1-RFC complex
    104605803
Chromosome and associated proteins [BR:nnu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104605803
DNA repair and recombination proteins [BR:nnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104605803
  Check point factors
   HRAD17(Rad24)-RFC complex
    104605803
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 RCF1-5-like_lid Rad17 RuvB_N AAA_5 Mg_chelatase AAA_16 AAA_14 nSTAND3 AAA_11 SLFN-g3_helicase nSTAND_NTPase5 AAA_2 AAA_assoc_2 AAA_24 ResIII PhoH AAA_19 AAA_18 AAA_7 AAA_28 AAA_30 RNA_helicase AAA_25 NPHP3_N TIP49 Parvo_NS1 AAA_17 DUF815 bpMoxR NB-ARC DNA_pol3_gamma3 CPG4
Other DBs
NCBI-GeneID: 104605803
NCBI-ProteinID: XP_010269005
UniProt: A0A1U8AZP3
LinkDB
Position
Un
AA seq 344 aa
MAPVVPSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGGRQGGHPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMS
SRIVHICREEGLNLDSEAFSTLSSISQGDLRRAITYLQGAARLFGSSISAKDLISVSGVI
PQDAVQALLASCRSGDFELANKEVSNVISEGYPVSQMLSQFCQLFEVIVEANDISDEQKA
RICKRLAEADKCLVDGADEYLQLMDVASNTMRALCNMPMEFSYE
NT seq 1035 nt   +upstreamnt  +downstreamnt
atggcacctgtagttccgagctcgcagccgtgggtggagaaatatcgaccaaagcaagtg
aaggacgtagctcaccaggatgaggttgttcgggttctaaccaataccctcgagactaca
aattgcccacacatgcttttctatggccctccggggacgggcaagacaacaactgccctc
gctattgctcacgagttatttggacctgaactttacaagtctagagtactggagctaaat
gcaagtgatgaccgtgggatcaacgtagtacgaactaagattaaagattttgcagctgtt
gctgtaggctctggtggccgtcaagggggtcatccttgcccaccctacaagatcataatc
ctagatgaagccgactcaatgacagaagatgctcagaatgccttgcgacgtactatggaa
acctactctaaggtcacacgattcttcttcatttgtaactacattagcaggatcattgag
ccacttgcttccaggtgtgcaaagtttaggttcaagccactctccgaagatgtcatgagt
agtcgaatagtgcatatttgtagagaagaaggtctcaatctggactcagaggctttttca
accttgagtagcatttctcaaggtgatcttcgtcgggccataacgtacttgcagggagct
gctcgcttatttggttcatctatttctgccaaggacctaattagtgtatctggggtaatt
ccacaagatgctgttcaggctctattagcatcatgtagaagtggtgattttgagttggcc
aacaaggaagtcagtaatgtaatttcagagggatatccagtttctcagatgctttctcag
ttctgccagttgtttgaggtgattgtagaagcaaatgatatatcagatgaacagaaggca
agaatctgcaagagattggctgaagcagacaagtgtctagttgatggagcggatgagtat
ctgcagcttatggatgtggcaagcaatacaatgcgagcactttgtaacatgccaatggag
ttctcatacgagtag

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