KEGG   Nelumbo nucifera (sacred lotus): 104606335
Entry
104606335         CDS       T04131                                 
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104606335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104606335
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     104606335
SSDB
Motif
Pfam: RNase_PH RNase_PH_C ARMET_C
Other DBs
NCBI-GeneID: 104606335
NCBI-ProteinID: XP_010269779
UniProt: A0A1U8B2E1
LinkDB
Position
Un
AA seq 303 aa
MGSSGASGDLSGEMEVDAFRRLFPLRFYERHLLESVRPDARPLGRARDTTVALGAVATAD
GSAMAKIGCTTMLAAIKLEVMTPPLDSSDEGSVAIDFHMPPICSPIVRPGRPAEVAPVVS
KQLSDAIISSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLAAVAAFSHLQIP
AVTVNDDGRVVIMSGENEEGKLLKDPVNKEKRKLTLTCIPFSLTCILHKNYILADPTAEE
ESVMETPVTVVLDSSSRLVSLYKPGGPVLAYMSAVQDCVALTRQRVKELQKILSDAISDM
EVD
NT seq 912 nt   +upstreamnt  +downstreamnt
atggggtcatcgggtgcctctggagatttatctggggagatggaggtggatgcttttagg
cgtctcttccctctgcgtttctatgaacgccatctccttgagtctgtacgtcctgatgcc
aggccacttggcagagcaagagataccactgtggcccttggggctgtggcaactgctgat
gggtcagccatggcgaagattggttgcacgaccatgttggctgcaatcaagttggaagtt
atgactcctccattggactcatcagacgagggctccgtagctattgatttccacatgcct
ccaatttgctctccaattgttaggcctggcagaccagcagaggtggcaccggttgtgtca
aaacagttatctgacgcaattataagttctggaatgatcaatttaaaggaactgtcatta
gtcagtggaaaggcagcttggatggcatatttggatatatactgtctagatgcagatggt
gctcttttcgatgcagcattacttgcagcagttgctgccttctctcacttgcaaattcca
gctgtcactgtcaatgatgatggaagagttgttatcatgtcaggggaaaatgaagaaggc
aagctactaaaagacccagtcaacaaagagaaaaggaagcttactctgacttgtattcct
ttctcattgacttgcatccttcacaaaaattacatcttggctgaccctactgcagaagaa
gagtctgtgatggaaactcctgttactgtggtattagactcttcaagtcgacttgtgtcc
ctctacaagccaggaggaccagttcttgcttacatgtcagctgttcaggattgtgttgca
cttacaaggcaaagagtgaaagaactccagaagattcttagtgatgccatttctgatatg
gaagttgactag

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