Nelumbo nucifera (sacred lotus): 104606417
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Entry
104606417 CDS
T04131
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104606417
03015 mRNA surveillance pathway
104606417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104606417
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104606417
5.6.2.5 RNA 5'-3' helicase
104606417
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104606417
mRNA cycle factors
Common to processing body (P body) and stress granule
104606417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
104606417
NCBI-ProteinID:
XP_010269894
UniProt:
A0A1U8B2M6
A0A822ZVM4
LinkDB
All DBs
Position
Un
AA seq
1274 aa
AA seq
DB search
MAAQTVTNNLYEAASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWPTPSDSV
SDPSERGADIQVDGSAVSSAPGSASKGRGGSSSGSSNQATVDAIAAGMNGLSFEETGEDD
NYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDD
EPQSVALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHDCLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGTIVSSS
PNADKRGNRSKGSYMPFGAPNGTHKPGVHPAGFPVPRIPLPPFPAGPHSQPYAIPTRGAV
HGPIGAVPQVPQAGSRGFGSGRGNAGGPIGGHLSHQQGSQQNIGSVGSNFNFPSLDNPNS
QPSVGGPLSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYNVADFST
QVSQSGYGVDYVTQGAQGGFPGSFLNQNSQAGYSHLGTGNDFISQDYMPHGSQGLFTQVG
FNDPSQEDTSQAHFGVGGPNPLQSQGLMNPLYSQPFTQYNTQPLNLQNPQQPQSQQQQPQ
QGQGSHNQKLHYNG
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagacggttacaaacaatctatacgaggcggcatcacagcctgatactgga
ggcgacgcctataccttccttgaattcaatacgcagggtgacgactatgattacccagaa
ttccgagaactatcgcagccgatcaggtcttccgtgtggcctacaccctcagattccgtg
tcagacccttcagagcgtggggctgatatacaggtcgatggtagcgctgtttcttccgct
ccaggaagtgcgtcgaaaggtaggggtggtagcagcagtggcagcagcaaccaggctacg
gtggatgccatagcggcgggaatgaacggcctgagctttgaggagaccggagaggatgat
aattacgagtatggaaagggtgatttcacggaacatgcttgtcggtactgtggggtccag
aatccggcatgtgttgttaggtgtaacgtgccttcatgccggaagtggttctgtaattca
cgggggaatacttcgggttcgcatatcgtcaatcacctggttcgagcaaaacacaaagaa
gtctgtcttcataaagacagtcctctgggagaaacaattcttgaatgttacaactgtggt
tgccgaaatgtgttccttcttggatttatttctgcgaagacagagagtgttgttgttctt
ctttgtagagaaccttgtttgagtgttaatgcattgaaggacatgaactgggatttgagc
cagtggtgtccacttattgatgataggtgtttcttgcagtggcttgttaaggtcccatct
gaacaggaacagttaagagcacgccaaattagtgctcaacagataaataaggtggaggag
ctttggaaaactaatcctgatgccaccttagaagatcttgagaagcctggagtggatgat
gaacctcaatccgtggccttgaagtatgaggatgcatatcagtatcaaaatgtatttgca
ccacttgtgaagcttgaagctgattatgataaaatgatgaaagaatcacagagtaaagac
aatgtcacaatacgttgggatattggtcttaacaagaaacgcattgcatactttgttttt
ccaaaggaagataatgagctgcggcttgtacctggtgatgagttgcggcttcgttattca
ggtgatgcagctcatccagcatggcagtcggtggggcatgtgatcaagctgactgcacaa
gaagaggttgctcttgagctccgtgctagccagggcgttcctgttgatgtgaaccatggt
ttcagtgttgattttgtttggaagagtaccagctttgatcggatgcagggtgcaatgaaa
acttttgcagtggatgaaacaagtgtcagtggatacatataccatcacttgctaggacat
gaagttgaggctcaggtggttcgtaatacactacctcgtcgttttggtgcaccaggcctt
ccagaacttaatgcatcacaggtttttgctgtaaagagtgtactgcagaaaccgattagt
ttaatacaagggcctcctggcacagggaaaactgtaacctctgcagccattgtgtatcac
atggccaaacaaggccaagggcaggttttggtttgtgctccaagtaatgttgctgttgac
caacttgctgaaaagatcagtgcaactggtttaaaggttgtcaggctttgtgctaaatca
agggaagctgtgagctctcctgttgagcatttaacattgcattatcaggtccgacatctt
gatacatctgaaaagagtgaacttcataagctgcagcaactgaaggatgaacaaggtgaa
ctgtctagtagtgatgagaagaagtacaaggccttgaaaagggcaaccgagagggaaata
tctcagagtgctgatgttatctgttgcacatgtgttggtgctggggatcctcgactggca
aattttagattccgccaggttcttattgatgagtctacccaggcaacagaacctgaatgc
ctgattcctttagtgcttggtgtgaaacaggttgttcttgttggagaccactgtcaactt
ggtcctgtgatcatgtgcaagaaagcagcgcgagccgggctagcccaatctctctttgaa
cgacttgtacttcttggtgtgaaaccatttagattgcaggttcaatatcgaatgcatcca
tcactatcagaatttccgtctaacagcttttatgagggtacacttcaaaatggagtgacc
atcaatgaaaggcaatcgtcagggattgattttccttggcctgttccaaatcgtcccatg
ttcttttatgttcagatgggacaagaggagataagtgcaagtgggacttcttatttaaat
aggactgaggctgcaaatgttgaaaaaattgtaactactttcttaaggagtggtgttgtt
cctagtcagattggagttataacaccatacgaagggcaacgggcctacatagtgaactat
atgtcaagaaatggtgctctcaggcagcaactttacaaggaaattgaggttgcaagtgta
gattccttccagggaagggagaaagattatatcattttgtcttgtgtgagaagtaatgag
catcagggcattggattccttaatgatccacgcaggctaaatgtcgcacttacacgagct
cgttatggtattgttatcttggggaatcctaaagttttgagcaaacagccattgtggaat
agcttattgactcactacaaggaacatgattgcttggtggaaggacctttgaataacctg
aagcagagtatggttcagtttcaaaagccaaagaagatctacaatgatcgaagacttttc
tttggaggtggcccagggattgttccaaatgataattttgggactattgtatcttctagc
ccaaatgctgataaaagaggcaaccgctctaaaggttcttatatgccatttggtgcaccc
aatggtacccataagcctggtgtgcacccagcaggatttcctgtgccgcgaattcctctt
ccaccatttccggctggtccccattcacagccttatgcaattccaactcgtggagctgtt
catggtcctattggagctgttccacaggtccctcaagcaggtagcaggggttttggatct
gggcgtggtaatgctggtggtcctattggtggtcacctctcacatcagcaaggttcccag
caaaacattgggagcgttggctctaatttcaattttccttctctggacaatccaaatagt
cagccatctgttggaggtcccttatctcagactgggcttatgactcagatgccggttcaa
gggctaagccagacattccgtgatgggttttctattggaggcatgtctcaggatttcttg
ggagatgacttcaaaagtcaggggtcacatgttgcttataatgttgcagacttctccacc
caggtttctcaaagtgggtatggtgttgattatgttacccaaggagcacaaggtgggttt
ccaggaagctttctaaaccagaattcacaggctggatactctcatttgggtactggaaac
gatttcatatctcaggattacatgcctcatggatcacaaggtctatttactcaggttggg
tttaacgacccatcacaagaagatacttctcaggcacattttggtgtcggtggtcctaat
ccacttcaatcacagggcttgatgaatcctctctactcacaacctttcacccagtataac
acacagccactcaacctgcagaatccacagcagccacaatcacagcagcagcaaccacag
cagggccagggctcacataaccagaagctccactacaatggctga
DBGET
integrated database retrieval system
