Nelumbo nucifera (sacred lotus): 104606906
Help
Entry
104606906 CDS
T04131
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104606906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104606906
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104606906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_17
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_19
ARM_TT21_C
TPR_7
TPR_9
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
104606906
NCBI-ProteinID:
XP_010270637
UniProt:
A0A1U8ART4
LinkDB
All DBs
Position
Un
AA seq
1180 aa
AA seq
DB search
MKNTEDEDRLRELQEAIYSDPDNYSHHYNLGLFLWEKGEDTKELKEKAVEHFVISAKLNP
NNSHTFQFLGHYYSRVSVDSQRASKCYQRALTLNPNDSESGEALCDLLDNEGKESLEIVV
CKEASEKSPRAFWAFRRLGYLQVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLG
MFTAAIKSYGRAIELENSRVFALIESGNILLTLGSFRKGVEQFRQALETSPCNIAAHYGL
ASGLLGLSKECVNSGAFSWGASLLEEASDIVKKSTFLAGNITCIWKLCGDIQLTYAKCLP
WVDEGQKLGTNEEAFRTSIFSWKRKCHLTAIAASHSYQRALHLAPWQPNIYIDIAISVDL
IYSLEERSRPESDVWQLPEKMSLGGLLLEGDNDDFWVSLGCLSDNNALKQHALVRGLQLD
VSLAVAWAYLGKLYRKQGEKQLARQAFDHARSIDPSLALPWAGMSVDTHSRGCTPEEAFE
SCLRAVQILPLAEFQIGLGKLAFDSGQLVSSQVFAAIQQAVQHAPHCPEAHNLNGLICEA
RSDYESAISAYKLAQCAISTLAISAPKSHFYDVSINLARSLCQAGNALDAAQECEFLKKE
GMLDSRVLQIYAISLWKLRKNDLALSVSRNLAASIPTMERTSGVVSISLICKLLYHISGQ
VSAITSIMKMPKELLQSSKISFIVSAINALDHSKRLESLIPSTRHVLKSYEEITGMHSLI
AISKLVRHGSEESLVIQSGVNHLRKALHMYPDSSLIRNQLGHLLLSSKEWKDIHIATRCS
IINPPDCPAVRGSKSGYGILGAAAVACYASSTTDQRFSFHTCKDQCMDGARALQKMQRWL
HQEPWNHNARYLLLLNVLQKARKERFPWHLCITLKRLVLSALFNEEQYLKKDASHIYQKF
QILLCASEISLQSGDHIDCINHATNASKLLVPDGNLFFAHLLLCRAYALQGDFPNMHKEY
LKCLQLKTNHEIGWICLKLIESRHKLQIDVNKIELNFEESLKENRSSWDKWMAIFNLLQG
QSSIWGHDYISAEEALAHACSLAGAESCLFLCHGAICMELARQQCGSQFLSLAVGSLTKA
QEASIIPLPIVSTLLAQAEASLGSRAKWEKNLRLEWFSWPPETRPAEVYFQMHVLARQAD
SISDSSYVESFQSSQKWLLRAIHLNPSCLRYWRVLQKWTG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacggaagatgaagatcggttaagagaattgcaggaagccatatattccgac
ccggacaattattcccaccattacaatctcgggcttttcttgtgggagaagggggaagac
acgaaggaattgaaggaaaaagcagtagagcatttcgtaatttcagctaaactaaatcca
aacaatagtcatacctttcagttcttaggccactactacagtcgagtatcggttgactca
caaagagcttctaagtgttaccagagagctctcactctcaatcccaatgattctgaatct
ggggaagctctgtgtgatttattggataatgaaggcaaagagagtttggaaattgttgtg
tgcaaagaagcttcagagaagtcaccgagggctttttgggctttccggaggctaggttac
ctgcaggtgcatcaaaagaaatggtctgaagccgtacagagccttcaacatgctataagg
ggttaccctacatgtgcagatttatgggaagctcttggtcttgcataccagcgactggga
atgtttacggctgctataaaatcatatgggcgagccattgaattggagaattcaagagtc
tttgcattgattgagagtggaaacattttgttgacgcttggttccttcagaaagggagtg
gagcaatttcgacaggctttggaaacttcaccttgcaacatagctgcacattatggtcta
gcttctgggttgcttggtttgtcaaaggagtgtgtaaattcaggtgcatttagttgggga
gcttcattactggaggaagcatctgatattgtgaaaaaaagtacgtttttagcaggaaat
attacctgcatttggaagttgtgtggtgatatccagcttacatatgcaaaatgtttgcca
tgggtggatgaaggccagaaattaggaaccaacgaagaggcttttagaacttccatcttt
tcctggaaaaggaagtgccatttgactgcaatagctgctagtcattcttatcagcgggct
ttacacttggcaccatggcagcctaatatctacatagacattgcaatctctgtagatctc
atttattcattggaggaaagaagtagacctgagtcagatgtttggcagctgcctgagaag
atgtccctaggtggcttgttgcttgaaggagacaatgatgacttctgggtgtctttagga
tgcttgtcagacaacaatgcattgaagcagcatgctcttgtcagaggattgcagttggat
gtatctcttgctgttgcatgggcatacctgggaaaactttacagaaaacagggtgagaag
cagttagctcgccaagcatttgatcatgctagaagcatagatccttcccttgcattacca
tgggcgggaatgtcagtggatacccattctaggggttgcacgccagaggaggcatttgaa
agctgcctacgggctgtacagatattgcctcttgcagaatttcaaattggtcttggaaag
cttgcttttgattcaggccaacttgtatcttcacaggtttttgcagccatccaacaggct
gtgcagcatgcacctcactgtcccgaggcccataatttgaatgggctgatttgtgaggca
cggtctgattacgagtctgcaatttctgcttataagctagcacaatgcgccatcagcact
ttagcaatcagtgcacctaagtcccatttttatgatgtatcaattaatctggccaggtcg
ctttgtcaggcaggtaatgcccttgatgcagcacaagaatgtgaatttttgaagaaagaa
ggtatgcttgatagcagggtcttacaaatatatgctatctccttgtggaagcttagaaag
aatgatctggccctctctgtgtcaagaaatctagcagcaagtattcccacaatggagcga
acatctggtgtagtctctataagtttgatctgtaaattgctgtaccacatttctgggcag
gtatctgcaataacaagcatcatgaaaatgcccaaggaattattgcagagctcaaagata
agttttattgtctctgcaattaatgctctggatcatagcaaacggcttgagtcgcttatt
ccaagtactcgtcatgttcttaaatcttatgaagagattactggaatgcattctctaatt
gccataagcaaactagttagacatggatcagaagagagcttggtaattcagagtggagtg
aatcacctcagaaaagctcttcacatgtatcctgatagtagtttgataaggaaccaactt
gggcatcttttactgtccagtaaagaatggaaagatattcacattgcaaccaggtgttcc
atcattaatcctcctgattgtccagctgtgagaggttcaaaatcaggatatgggatttta
ggtgctgcagctgttgcatgctatgccagtagcactaccgaccagaggttctctttccat
acgtgtaaggatcagtgcatggatggagcacgagcactgcaaaaaatgcagagatggttg
catcaagaaccatggaaccataatgccaggtacttgcttctacttaacgttcttcagaaa
gctcgtaaggagagatttccttggcatctatgtattacactaaagcggctagtattgtct
gctctctttaatgaagaacaatacttgaagaaagatgcttctcatatttatcaaaagttt
cagatcttactatgtgcttctgagatcagtttgcaaagtggggaccacattgactgtata
aatcatgctacaaatgcatcaaagcttctggttcctgatggcaatctcttctttgcacat
ttgctcttatgccgtgcctatgcactacagggggactttccaaacatgcacaaagagtat
ttgaaatgcttgcaacttaagacaaaccatgaaattggttggatatgcctcaagttaatt
gaatctagacataaactacaaattgatgttaacaagatagagttgaattttgaggaaagc
ttgaaggaaaacaggagttcatgggataaatggatggccatctttaatttactgcagggt
cagagttccatatggggtcatgattatatttctgctgaggaggctcttgcacatgcttgt
tcattggcgggtgctgaaagttgcctatttctctgtcatggtgctatctgtatggagctt
gctaggcagcagtgtggctctcaattcttatcgcttgcagtgggcagtctcaccaaggct
caagaggcctctatcattccattacctattgtttcaacattgctggctcaagcagaggca
agccttggttccagagcaaagtgggaaaaaaacctccgtcttgaatggttttcttggcca
ccagagacgaggccagctgaagtgtattttcagatgcatgtgcttgcaagacaggccgac
tctatttctgactcttcttacgtggagtcttttcaaagttcgcagaagtggcttctccgg
gcaattcatttgaatccgtcttgtttgagatactggagagttttgcagaagtggactggt
tga
DBGET
integrated database retrieval system
