Nelumbo nucifera (sacred lotus): 104606924
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Entry
104606924 CDS
T04131
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104606924
03015 mRNA surveillance pathway
104606924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104606924
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104606924
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_10
RRM_ACIN1
RRM_3
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
104606924
NCBI-ProteinID:
XP_010270663
UniProt:
A0A1U8AVR9
LinkDB
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Position
Un
AA seq
413 aa
AA seq
DB search
MAKPGRGRPATPSGSGSGSSSPSRSSSGSDSRSRSRSRSFSRSRSKSFSSSSSPSRSVSS
SRSPPPQRRSPLGAGRRGHSPPPPTKRASPPPRKASPVLESVVLHIDQLTRNVNEGHLRE
IFSNFGEVVNVELTMDRSVNLPRGYGYVEFKTRADAEKALLYMDGAQIDGNVVRARFTLP
PRQKVLSPPKAVPATQKREGPQKDNVGADIENDGQQRQRESSPRRKPLSPPRRRSPVAHR
RGESPRRRPDSPQRRRVESPVRRRGESPYRRGETPPRRRLSSPARRRSPSPPRRHRSPAR
ASPRRVRGSPVRKRSPIPPRRRSPPRRARSPPRRSPINRRRSRSPVRRLARSRSRSVSPR
RGRALAQRRGRSSSSESSPRKVSRRISRSRSPRRPARGRASSNSRSSSSPSKP
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccggtcgaggtcgaccggcgaccccctcagggtctgggtcaggctcgtca
tctccgtctcgctcgtcttctggttcggattctcgctctcgttcgcgttctcggtcgttc
tccaggtctcgatccaagtctttctcctcgtcttcctctccatcacggagcgtcagttct
agccgaagccctccgccacagagaagaagtcctttaggggcaggcaggcgtggtcactct
ccgccgccaccaactaaacgagcttcaccacctccaaggaaagcatctccagttcttgag
tctgtggttcttcacattgatcagcttacaaggaatgtcaatgaaggccacttgagagaa
atattcagtaactttggtgaagttgtgaatgtggaactgacaatggatcgtagtgttaat
cttccacggggatatggatatgtcgagttcaagaccagagctgatgcagaaaaagccctt
ctttacatggatggtgcacaaattgatgggaatgttgttcgtgcaaggttcaccttacct
ccacggcagaaagttctgtcacctccaaaggctgtccctgctactcagaagagagaaggt
ccccaaaaggataatgttggtgctgatattgaaaatgatggtcaacaacgacagagagaa
tcttctccacgtcggaaacctctttcacccccacggagaagatctcctgttgctcataga
agaggtgaatcacctcgccggcggcccgactctcctcaacgtcgacgtgtggagtctcct
gttcgtcgtcgtggagaatctccatatcgccgtggtgaaacacctcctaggaggaggttg
tcatcaccagctagaagacgttctccatcccctccaaggcgacataggtcaccagcacga
gcttctccccgaagggtacgtggtagtccagtccgcaaacgctcccccattccaccaagg
cggcgatctccccctagacgggcacgtagtccccctagaaggtctcctatcaatcgtagg
cgcagtcgttctccagttcgtaggcttgctcgctcacgttcaagatcagtctctcctcgc
aggggtcgagcattagctcaaagacgtgggaggtcttcttcatctgaatctagtcctcga
aaggtatccaggagaatttcaaggagtcgtagtccaagaaggccagcaaggggtagagcc
agtagcaacagccgcagcagcagctccccttctaagccataa
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