Nelumbo nucifera (sacred lotus): 104607084
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Entry
104607084 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104607084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nnu03041
]
104607084
03009 Ribosome biogenesis [BR:
nnu03009
]
104607084
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104607084
Spliceosome [BR:
nnu03041
]
Complex A
U1 snRNP components
U1 related factors
104607084
Complex B
104607084
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
Pre-60S particles
Helicases
104607084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
Motif
Other DBs
NCBI-GeneID:
104607084
NCBI-ProteinID:
XP_010270889
UniProt:
A0A1U8B528
LinkDB
All DBs
Position
Un
AA seq
1174 aa
AA seq
DB search
MATAEAAPASLGPRFAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYERPVSFPPPLP
PGPPPAASTPKLAPIPMARTFQQPNGVLGQQGQQMTQVTPQSGQQIAQGIQQQQLIPQQH
VASGQQQAQQAAQATQQQSQMTPAVQQQPQMAQAVQQQPQMAQAVQQQPQMTQAVQQQPQ
MTQAVLQQGQLMQHQFRPQMVQQVPQMPQQLGQQTPQHQGQQMPHQPGQQFQYQHLQQMS
YQQTPHPQGSQHLQQPAQQGAHQQGPQIPQQQAQQTGSQQGQPISQQQSQQNTYQQGQKM
GFIQEETEYQQGKQIGISTSQIQQAGTSSLHSLPTGTHSVQTPQIGARSVHAQQFGSPAV
SAQQTGSPLVQMPQIGMDPVLRQQMGGPMVGNQMGPSVIPNQQAGGPSTGLKIEYENPRG
RAGNDLYLNANKEGTSMVSQPPGLTTIPMGRNQQGVWMDGVPPQRMTPGHAGGPNIMPGH
AMPNMYHHAAVVPPFPSNAPVRPASRMFGSVDAGNLSPAEVYRRQHEVTATGDNVPAPFM
TFEATGFPPEILREIHLAGFSSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI
HLRQCRNNPQNGPTVVVLAPTRELATQIQDEAIKFGRSSHISCTCLYGGAPKGPQLRDLD
RGADIVVATPGRLNDILEMRKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT
LMYTATWPKEVRKIAGDLLVNPVQVNIGTVNELVANKAITQYVEVVPQMEKQRRLEQILR
AQERGSKIIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA
TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSDQDWKYATDLV
KVLEGSNQRVPPELREMALRGGPSFGKGRGGMNRWESSSARWDSGGRGGMRDGGFGGRGG
MRDGGFGGRGGRNETFGGRGNRGRGFGPGGGASGRGRYDRAPYDRRNNMDGRGRYDNRRG
IADRSRGRSYSRSYSPSPERVRTWDYSRSRSRSRSRSRSRSKSHSWSRSRSRSRSFSRSR
SRSFSRSRSQSRSQSKSHSYDRYQRENERDHDQITAAPDYGAPPESPMSPGTQGGSFPGI
EPVAPEMLADGSGPIYPVNAVIGAVPSFQPVNEP
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcggaggcagctccagcttcgctgggtcctagatttgcgccagatgatcca
acacttccaaagccttggaagggattgattgacggaagcaccggccttttgtactattgg
aatcctgaaactaatattacgcaatatgaaaggccagtcagttttccccctccattgcca
ccgggccctcctcctgcggcatctactccaaagctggcaccaatacccatggcccggaca
ttccaacagccgaatggtgtgttaggtcagcagggacagcaaatgactcaggtgacacca
caatcagggcagcaaattgcacaaggcattcagcagcaacaattaataccacagcaacat
gttgcatcaggtcaacagcaggcacagcaagcggcacaagctacacagcaacagtcacaa
atgacaccggctgtgcaacagcagccacaaatggcacaggctgtgcaacagcagccacaa
atggcacaagctgtacaacaacagccacaaatgacacaggctgtgcaacaacagccacaa
atgacacaagctgttctacagcaagggcagctaatgcaacatcagtttaggccacaaatg
gtccaacaggtaccacaaatgccacaacaacttgggcaacaaacacctcaacatcaaggg
caacaaatgccgcatcaacctgggcagcagtttcagtatcagcacctgcagcaaatgtca
tatcagcaaacaccacatccacagggttcacagcatttgcagcaaccagcacagcagggt
gcacaccagcaggggccacaaattcctcaacagcaggcacagcagactgggagtcaacag
ggacagccaatttcccaacagcagtcacaacagaatacatatcaacaggggcagaaaatg
ggatttatacaggaggaaactgagtatcaacaagggaaacagattggaatttcaacatca
cagatccaacaggctggaacctcttctcttcacagtctacccactggaactcattcggtg
cagactccacagattggtgcgcggtcagttcatgcacaacaatttggtagccctgctgtg
agtgcacaacaaactggttcaccattggttcaaatgccacaaattgggatggatcctgtt
ctccggcaacaaatgggtggacccatggttggaaatcagatggggccatctgttattcct
aatcaacaagctggtggaccctctactggtttgaaaatagagtatgaaaatcctcgtgga
agagctggtaatgatttatacctcaatgccaataaggaaggtacaagtatggtttctcag
ccaccagggcttactaccattcccatgggacggaaccagcagggagtgtggatggatggt
gttcctccccagagaatgacacctggtcatgccggtggaccaaacattatgccagggcat
gcaatgcctaacatgtaccatcatgctgctgtggtaccaccttttcctagcaatgcacca
gtaaggcctgcttcaaggatgtttggttcagtggatgctggaaatctgtcacctgctgag
gtctaccgccgacagcacgaagttaccgcaacgggtgacaatgttcctgctcccttcatg
acatttgaagctactggtttccctccagaaatactcagagagatacatcttgctggtttt
tcttctcccacaccaatacaggcacagacatggcctattgcactccagagtagggatata
gtggccattgccaaaacaggttctgggaagaccttgggttatctgattcctgccttcatc
catcttagacaatgtcgaaataatcctcagaatggtccaacagttgtggttttggctcca
acacgtgagcttgcaacacaaatacaagatgaggctatcaagtttggtcggtcttcacac
atctcttgcacttgcttgtatggtggagctccaaagggcccccagcttagagatttagat
cgaggggcagacattgttgtggcaactcctggtcggctcaatgacattcttgagatgagg
aagatcgacttccgtcaagtttccttacttgtgcttgatgaggcagatcgaatgcttgat
atgggttttgaacctcaaatacgtaagattgtgaatgagattcccccacgcaggcagact
ctcatgtacactgcaacctggcccaaggaggttagaaaaatagcaggagatctactggtt
aaccctgtccaggtgaacatagggactgtcaatgagcttgttgcgaacaaagccatcaca
cagtacgttgaggtagtcccacagatggagaagcagaggcgcttggaacaaattctcaga
gctcaagaacgtgggtctaagattatcatcttctgctcgacaaagaggttatgtgatcaa
cttgcacgcagtattgggcgcaactttggtgctattgcaatccatggagacaagtctcag
ggtgagagggactgggttctgaatcagttccgcagtggaaagtcccctattttagttgcc
actgatgttgctgctcggggacttgacattaaagacattagggtggttatcaattatgac
tttccaactggggtcgaggattatgtccaccgaattggaagaactggaagggcaggtgca
acgggggtgtcgtataccttcttctctgatcaggactggaagtatgcaactgatctggtt
aaagttttggaggggtcaaatcaacgagttccaccagaattgcgggagatggctttgcgt
ggtgggcccagttttggcaagggccggggtgggatgaaccgttgggaatctagcagtgca
cggtgggattctgggggccgtggtggcatgagggatggtggctttggtggccggggtggc
atgagggatggtggttttgggggccgtggtgggagaaatgaaacttttggtggacgtgga
aaccggggacgaggatttgggcctggtggaggtgcgagtggcaggggaagatatgatcgg
gctccgtatgataggcgcaataacatggatggtagggggaggtatgataaccgaagagga
attgcagataggagtagaggtagaagttacagtagaagttatagtcccagtccagaaagg
gtgcggacatgggattatagcagaagcagaagcagaagtagaagccgaagccgaagccga
agcaagagtcatagttggagtcggagtcggtcccgcagccgcagtttcagccgtagtcgt
agccgcagcttcagccgtagtcggagccagagccggagccagagcaagagccacagttat
gatagatatcagagggaaaacgaaagggatcacgaccagattacagcagcacctgattac
ggggctcctccagaatcccctatgtcaccaggaacgcaaggtggctcattccctgggatt
gaacctgttgcaccggaaatgttggctgacggttctggacctatataccctgtcaatgct
gtcattggagctgtgccaagctttcagccggtgaatgaaccctag
DBGET
integrated database retrieval system
