Nelumbo nucifera (sacred lotus): 104608733
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Entry
104608733 CDS
T04131
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104608733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104608733
03036 Chromosome and associated proteins [BR:
nnu03036
]
104608733
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104608733
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104608733
mRNA degradation factors
5'-3' decay
Decapping complex
104608733
Chromosome and associated proteins [BR:
nnu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104608733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DUF769
NA-iREase2
Aldedh
Motif
Other DBs
NCBI-GeneID:
104608733
NCBI-ProteinID:
XP_010273108
UniProt:
A0A1U8B9Q7
LinkDB
All DBs
Position
Un
AA seq
483 aa
AA seq
DB search
MNTRGRYPPGIGNGRGGNVNANPNFQARNPQQQYVQRSTVQNPQQFQQQQQQQWLRRNPM
GTESGSNEVEKTVQSEAVDSSSQDWKARLKIPPTDTRYKTEDVTATKGNEFEDYFLKREL
LMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQV
VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD
LAKKGICILKYCSMLVMDEADKLLSPEFQPSVDQLIRFLPENRQILMFSATFPVTVKDFK
ERYLHKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVE
LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN
FDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI
YCR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcgaggtaggtatccacccgggatcggtaacggtcgcggtggaaacgttaac
gcaaaccctaattttcaagccagaaaccctcaacaacagtatgtgcagaggagtaccgtg
caaaacccgcagcagtttcagcagcagcagcaacagcagtggttgagaaggaatcccatg
gggactgaatctggttctaacgaagttgaaaaaacagtacagtcggaagctgttgattcg
agttctcaagattggaaggcgcggctgaagatacctccaactgatacacgttacaagaca
gaggatgttacagctactaaaggaaatgaatttgaggactattttctgaagcgtgagctc
ctaatgggaatctatgagaaggggtttgaaagaccttctcctatccaggaagaaagtatt
cctattgctttaacaggaagtgatattcttgctagggctaaaaatggaactgggaaaaca
gctgcattctgcgttcctgcattggaaaaaattgatcaggacaacaatgttattcaagtt
gttatattggtcccaacacgagaattggctcttcagacatcacaagtctgtaaggagctt
gggaagcatttgaagatccaagtcatggtcaccactggaggaactagcttaaaggatgat
attatgcgtttgtatcaacctgtccatttgcttgttgggactcctggcaggatacttgat
cttgcaaaaaagggtatttgcatcttgaaatattgctcaatgcttgttatggatgaggca
gacaagcttttgtctcctgaatttcaaccatcagtggatcagctaattcgttttctgcca
gaaaatcgacaaattttgatgttttctgcaacatttccagtgactgtgaaggatttcaaa
gaaagatatttgcacaagccttacattattaatctcatggatgaacttaccctaaagggt
ataacacaatattatgcttttgttgaagaaaggcagaaggtccattgtctaaacactctt
ttctctaagcttcaaattaaccagtcaatcatattctgcaattcggtgaatcgggtggaa
ctgttggcaaagaaaataacagagcttggttattcatgcttctacattcatgccaaaatg
ttgcaagatcatcgtaatcgagtatttcatgattttcgaaatggtgcttgccgaaatctt
gtttgtacggatttgtttacgagggggatagatattcaagcagtcaatgttgttataaac
tttgatttcccaaagaactcagagacatatcttcacagggttggtcgatcaggtaggttt
ggacaccttgggctggctgttaatctgattacctatgaagaccgctttaatttgtatagg
attgagcaagagcttggtacagaaataaagcaaattcctccacacatagaccaggctatt
tactgcaggtga
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