Nelumbo nucifera (sacred lotus): 104609135
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Entry
104609135 CDS
T04131
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03022
Basal transcription factors
nnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104609135
09124 Replication and repair
03420 Nucleotide excision repair
104609135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nnu03021
]
104609135
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104609135
Transcription machinery [BR:
nnu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104609135
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104609135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
104609135
NCBI-ProteinID:
XP_010273663
UniProt:
A0A1U8BBT0
LinkDB
All DBs
Position
Un
AA seq
303 aa
AA seq
DB search
MASITSKLYSDDVSLLVVLLDTNPFLWSGENTTTNSLSFPKFLTHVFSFLNSILLLNQLN
QVVVIATGLNSCDYIYDSSSSPTTVESLENGRMPALCSKLLQNLEEFLARDQELNKDESP
PGIASSLLSGSLSLALCYIQKVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS
MVPIDACVIGAQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFSTDLQSRSFLQLPKP
VGVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAHSSATTTSDRKRKT
TES
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaattacatcaaagttgtattcagatgacgttagtcttcttgtggttctactc
gacaccaacccttttctctggagcggggaaaacaccaccaccaattcgctttccttcccc
aaattcctcactcatgtcttttcatttctgaattccattctcctcctcaatcaactcaat
caagtggtagttattgccactgggctcaattcttgtgactacatttatgattcctcatca
tcgcccacaactgtagagagtttggagaatgggagaatgcctgcactttgctccaagttg
ctgcagaacttggaggaatttctggctagagatcaagagttgaacaaagacgagtcacca
cctgggattgcatcctcattgctgtcaggatcattgtctctggccctttgttatatacag
aaggtgttccgttctggaccgcttcatcctcagcctaggattttatgcctgcagggatcc
tcagatggacctgaacaatatgttgcaataatgaatgcaatattctcggcccaacgttcc
atggttcctattgatgcatgtgttataggggcccaacattctgcctttctgcagcaggct
tcttacataacagggggcgtctatctgaagcccccacaactggatggattgtttcagtat
ctttcgactgtattcagcactgatttacagtcccgcagcttcttacaacttcccaagcct
gtgggagtggactttcgtgcctcgtgtttttgccataaaaagaccattgacatgggctac
atctgttcagtttgcttatctatattctgtaagcatcacaagaaatgttcaacgtgtggg
tctgtctttggtcaggctcactctagtgctactacaacttcagacaggaagaggaagact
acagaatcctag
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