Nelumbo nucifera (sacred lotus): 104609473
Help
Entry
104609473 CDS
T04131
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104609473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104609473
03012 Translation factors [BR:
nnu03012
]
104609473
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104609473
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104609473
Translation factors [BR:
nnu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104609473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
AAA_23
ABC_tran
AAA_16
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
104609473
NCBI-ProteinID:
XP_010274106
UniProt:
A0A822ZGJ7
A0A1U8B0G7
LinkDB
All DBs
Position
Un
AA seq
1159 aa
AA seq
DB search
MHFGLRVLGIVKFVSTLSRLRCKSADEALSWFLRVSISDGGEFRKWGGVWSNYLVAGRRS
FCGYAAEQFSDDEYECDFENHQASSSVVNIDEWKWKLSLLLRSEKDREIISRDKRDRRDY
EQISNIAKRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQE
HLDRMQLTSGQDRNNSVDDKVISQMEDVSQYENPDSFLDGSVMEKVLQRRSWRMRNLQRA
WQESPEGKKMLEFRKSLPAYKEKERLLSAIARNQVIVISGETGCGKTTQLPQYILESEIE
SGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGESVGYKVRLEGMKGKNTHLLFCTSG
ILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAEL
FSNYFGGSPKVHIPGFTYPVRAHFLEDVLEMTGYKFTSFNQIDDYGQEKLWKTQRQLVPR
KRKNQITALVEDALNKSNFENYSSRTRDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVL
VFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNVRKIVLAT
NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGEC
YHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKCLQLGSIGEFLSAALQPPEPRAVQNAV
DFLKMIGALDERENMTNLGEFLSMLPVDPKLGKMLVMGAIFHCFDPILTIVSGLSVRDPF
LLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCYRNFLSAQTLQA
IHSLRKQFSFILKDAGLLAPDARTNNSLSHNQSLVRAIICSGLFPGIASVLHRESSMSFK
TMDDGQVLLYANSVNARYQTITYPWLVFGEKVRVNTVFIRDSTGVSDSIVILFGGTLNRG
IMAGHLKMLDGYIDFFMDPSLADCYWNLKDELDKLIYRKLQNPSLDIHKEGKYLMLAVQE
LVSGDQCEGRFIFGREYRKARDSNENSQNNSSYTKDGSNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDRRDDDDDESPPDV
TDNMLKLLGRRRKPKRRSG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcgggttaagggttctggggatcgttaagttcgtttcgactctgtctagactc
aggtgtaagagtgcagatgaagctctgtcttggttcctgcgtgtttctatctccgatggc
ggagagttcagaaaatggggaggagtttggtccaattacttggttgctgggcggagaagt
ttttgtggatacgcggcagagcagttctcggacgatgaatacgaatgcgatttcgagaat
catcaggcatcttcctcagtggtcaatattgatgaatggaaatggaagcttagcttgctt
ttacgcagtgaaaaagatcgagagataatttctagggacaaaagagataggagagactat
gagcagatttctaacatagccaaaaggatgggactatacagtgaaatgtatggaaaagtg
gtggttgcaagcaaagttcctcttcccaattataggccagatcttgatgacaagcgccca
caaagagaggtggttatcccacttggcttgcaaaggagagttgaaggcctacttcaggaa
caccttgacagaatgcaattaacttctggacaggacagaaataattcagttgatgataag
gtcattagtcagatggaagatgtgagccagtatgagaacccagattcttttcttgatggg
tcagtgatggaaaaggttcttcagaggaggagttggcgaatgcgtaatttgcagagagct
tggcaggaatcaccagagggaaagaagatgttggagttcaggaaatctcttcctgcatac
aaggaaaaggaaaggctgctatctgcaattgcacggaatcaggtcattgtgatatctgga
gagactggatgtggaaaaaccacccaactccctcagtatatattagaatcagagatagag
tctggccgtggtgcgttctgtaatattatctgtacacagcctcgaagaatatctgctatg
gctgtttctgaaagagtgtccgcagaaagaggagagcctcttggtgaatcagttggttac
aaagttcgattagaaggaatgaagggaaaaaacacccacctgcttttttgtaccagtggt
attctgctcaggaggttgcttagtgacaggaatttgaatggtataacccacgtttttgta
gatgaaattcatgagcgaggcatgaatgaagacttccttttgattgtactgaaagatctt
cttcctcgtcgacgggatttgagactgattttgatgagtgccactctgaatgcggagctt
ttttcaaattattttggagggtcaccaaaagttcacattccaggctttacatacccagta
agagcacactttctggaggatgtattggaaatgactggatacaagttcacctcattcaac
caaattgatgattatggtcaggagaaactatggaaaacacaaaggcagctagtgccaagg
aagagaaaaaaccagataactgcacttgttgaggatgctcttaacaagtcaaactttgag
aactatagctccaggacacgggattctttgtcatgttggacacctgattgcataggattt
aatcttattgaggcagttttgtgccatatatgtcgtaaggaacgtcctggtgcagtgttg
gtatttatgacaggatgggaagatattagttgtctacgggatcaacttaaggctcatcca
cttttgggtgaccccaacagagttctgttgctcacatgccatggctcaatggctacatct
gaacagaaactaatatttgagaaggcacctcctaatgtgcgaaaaatagttcttgctact
aacatggctgaggcaagcataacaatcaatgatatagtttttgttgtagattgtggaaaa
gcaaaagaaaccacatatgatgctttgaacaacacaccttgtctacttccttcatggata
tctcaagcatctgctcgccaaaggaggggcagagctggacgtgtgcaaccaggagagtgc
tatcacctttatcctagatgtgtttatgaagcctttgctgaatatcaacttcctgaactt
ttgaggactcctttgaactctctttgtttgcaaataaaatgtttgcagcttggatctata
ggggaattcttatctgctgcattgcaaccaccagaaccacgtgctgtccaaaatgctgtt
gatttcctgaagatgattggagcacttgatgaaagggagaatatgacaaatcttggagag
tttctatcaatgcttccagttgatcccaagcttggaaaaatgcttgtaatgggggctatc
tttcactgttttgatcctattcttacaatagtgtcaggacttagcgtcagggatccattt
ctgttgcctcaagacaaaaaggatttagcaggaacggcaaaatcaagattttctgcaaag
gactacagtgatcatatggcacttgtccgtgcatatgaaggttggaaagatgcagaaagg
gaaggatctgcatacgagtattgctataggaattttctttcagcacaaactcttcaggct
attcactctctccggaagcaatttagctttattctaaaagatgctggtttattagctcca
gatgctagaacaaataatagtttgagccacaatcagtcattggttcgtgctatcatctgt
tctggcttatttcctggtatagcatcagttctgcacagagagtcttcaatgtctttcaaa
acgatggatgatggtcaagttttactctatgcaaattctgtgaatgcacgctatcagaca
atcacatacccatggctggtatttggtgagaaagttagggtcaatactgtctttatacga
gattccactggtgtgtctgactcaatagtgatactttttggtggtactcttaaccggggc
attatggctggacatttgaaaatgctggatggctatattgatttcttcatggatcctagt
ttggcagattgttattggaaccttaaggatgaacttgataagcttatctacaggaagctg
caaaatccaagccttgacattcacaaggaaggcaagtaccttatgcttgctgttcaggag
ttggtatcaggagaccaatgtgaaggtagatttatttttggtcgtgaatacaggaaggcc
agggactctaacgaaaacagccaaaataacagcagttataccaaggatgggagcaaccca
aaaagcttgcttcagactttattgatgagggctggtcatagccctccaaaatacaaaacg
aagcatctcaagactaatgagttcagggccctggtagagttcaaaggtatgcagtttgtg
ggaaagcccaagaaaaacaagcagcttgcagagagggatgctgctatagaggcattggcc
tggctgacacacacttctgacaggagggatgatgatgatgatgaatccccacctgatgtc
acggacaacatgttaaaactacttggtagacgcaggaagccaaaacgtcgctctggttga
DBGET
integrated database retrieval system
