Nelumbo nucifera (sacred lotus): 104609843
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Entry
104609843 CDS
T04131
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104609843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104609843
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104609843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
104609843
NCBI-ProteinID:
XP_019055381
UniProt:
A0A1U8QB99
LinkDB
All DBs
Position
Un
AA seq
1235 aa
AA seq
DB search
MINGSGIARRTRSQEALYFKRVYESMHGVTDDNVRVGECSGSKRTRSAGGRGRARAGAPV
KLQSGRRNEGSRSSKIDIPEVIPIEEEEEEKEGEVEGETDESGGEEAPSESSSEGSGLNR
RPESEPKGVVIIDVDESQEEYEDEGSSDGEFINTSVGSESTEKAGPEKIKNLQYLEEEEE
EEEEDGDNVRTPCRRKDEHQLDFNHKEKNCIARRTRSNVRCCKKPQNIRTSTYLDSEDSE
SSTDDDNDDTEDKDYEMDGSHNSCSVEESNSDEVESSSDEGNEGEEETSTSVEGDGESSD
VEVVKTGNSDRKGNDGSVGTQLRRNRFSGMDTALPSCSAKRVSSLLPSNSGKPNSRRKVD
YDAFVAKQTPLQFGLGSEKEMELGTASHPICLEKEEIDFLSNHSESDDEDNDEKVGGIDE
NNDNYETREGDTKEIGGEKEDEIGNPTKRKRVHAPQADQLFMAMVNSIWEKEDLIEKLIP
KRDIAMPVVEPELSLKFSFGIZKPKPVEKSDFEKELDQLWTEFDFALKSDEIGSFSSVVE
NEYSNVPESEMNQDTLCRLGKHELILDERIGIRCKFCSFIKLEIKYVLPPLGTNPVERSG
KRTTSAEDDASLLDGLHFEDASVDLCGSSVHTRGTVWDIVPGVRETMYPHQQEGFEFMWK
NLAGDVDLEKLNKSTGSDGVGGCVISHAPGTGKTLLTIIFLQTYMRQYPSCRPLIIAPRS
MLLTWEEEFKKWKVDIPFHNLNKLEFSGKEKLAALSLMKISAHRNKNFTRMIKLFSWNSE
TSILGISYPLFEKLAGERFVLDKEGEQIRKILLQKPGLLVLDEGHTPRNERSQIWKALSK
IETEKRIILSGTPFQNNFNELYNTLCLVRPTFAEKIQSQPRKIYQGKIVAEKKEAKGKWT
SLTSSIGKHDDRLEELRAMIDPFVHVHKGNILKENLPGLRDCVIVLHPPPLQKRLLQAIQ
GIQNPLELEYMVSLLSVHPSLLISMKGSFPRKEECNIEESINEDMLERIKLDPNEGVKIR
FLMELIRLSEAMNEKVLVFSQFIEPFSFIKEQLRSFFGWTEGKEVLQMDGKLDVKIRQSS
INLFNDPTSEVRILLASMKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKV
VYTYHLITSGTKEGEKYCRQAEKDRLSELVFSSRHMDGDKLNASPTVLKDEMEDKILEEM
VRHNKLKGMFEKIIYQPKDSNLFGDFWLNNSQTST
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgattaacggttccggcattgcgaggagaactcggtcccaagaagccctctacttcaaa
cgtgtatatgagagtatgcatggtgttacagacgataatgtgagggtgggagaatgcagt
ggtagcaagaggacgcgatctgccggaggaagagggagagctcgggctggggctcctgtg
aaattacagtctggtagaaggaatgagggcagtcgctcttcaaaaattgacattcctgaa
gttattcctattgaggaggaggaggaggagaaggagggggaagtagaaggagaaacagat
gaaagtggaggtgaagaagcaccatccgaatcttcttccgagggttctgggttgaacagg
agaccggaatcagaacccaagggtgttgttataatcgatgtagatgaaagtcaagaagag
tatgaagatgaaggaagtagtgacggggagtttattaatacctcggttggttccgagagt
accgaaaaagcgggaccagagaaaatcaagaatttacaatacctggaagaagaagaagaa
gaagaagaagaagatggtgataatgtcagaacgccttgtagaagaaaggatgagcatcaa
ttggatttcaatcacaaagagaaaaattgtatagcaaggagaacccgctcaaatgttcga
tgctgtaaaaagcctcagaatattcgtactagtacttatttagattcagaggattctgag
tcatctaccgatgatgacaatgatgatactgaagataaggactatgaaatggatgggtcg
cacaattcatgtagtgtagaagaatcaaattcggatgaagtagagtcaagttccgatgaa
ggaaatgaaggcgaagaagagacgtcaacttctgttgaaggggatggagaaagcagtgat
gtagaagttgtaaagacggggaattctgataggaaggggaatgatgggagtgttggcact
caattaaggagaaatagattttctggcatggataccgcacttccttcctgtagtgctaag
agagtgagttctctacttccttctaatagtggtaaaccaaactccagaagaaaagttgat
tatgatgcttttgtagcaaaacaaaccccattacaatttggtttaggatctgagaaggag
atggagcttggtactgctagtcacccaatttgtttggaaaaggaggaaattgatttttta
tctaatcacagtgagagtgacgatgaagataatgatgaaaaagttggtggaattgatgaa
aacaatgacaactatgagactagggaaggtgacacaaaagaaatagggggagaaaaggaa
gatgaaatagggaatcccacgaagagaaagcgtgtccatgcaccacaagctgatcaactt
ttcatggctatggtaaactccatttgggagaaggargatctcattgagaagttgattcct
aaaagagatatagctatgcctgtggttgagccagagctatcattgaagttctcatttgga
attsagaagcctaagccagtggagaaatcagactttgagaaagaattagatcagctgtgg
actgagtttgattttgctctcaaatccgatgaaattggttccttttcttctgtggtagaa
aatgagtactctaatgtaccagagagtgaaatgaatcaagacactctttgtcgtctaggg
aagcatgagcttatccttgatgagaggattgggatcagatgcaaattttgctctttcata
aagctggagatcaaatatgtattaccacctttgggtacaaatccagtagaaagatctggc
aagagaactacttctgctgaggatgacgcctctttgttggatgggcttcactttgaagat
gcaagtgttgatttatgtggttcttcagttcatactagaggtacggtatgggacatcgtt
cctggtgtcagagagaccatgtatccacaccagcaggaaggttttgagtttatgtggaaa
aacttagctggagatgttgaccttgaaaagctgaacaagtctacaggttctgatggtgtg
ggtggatgtgtcatttcacatgcacctggtacagggaagaccttgttgacaataattttt
ctccaaacatacatgaggcaatatcctagttgcaggccactcattattgctcctcgcagc
atgctacttacttgggaagaagaattcaaaaaatggaaggttgacattccatttcataat
ttaaacaaattagagttttctggcaaggaaaaattggcagctctttccttgatgaagata
tctgcacatcgaaataagaacttcactcgtatgattaagttgttttcatggaattcagag
acaagcatccttggcattagctatcctttgtttgagaagcttgctggggaaagatttgta
cttgataaggaaggtgagcaaataaggaagatcctccttcaaaagcctggtctattggtc
cttgatgaagggcacactcctcgtaatgagcgcagtcaaatttggaaagctttgtcaaaa
attgaaacagagaagcgcatcatcctctctgggacccctttccaaaacaactttaacgag
ctctacaatacactatgcctagtaagaccaacatttgcagagaagatccaatctcaacca
aggaaaatctaccaaggaaaaattgtggcagaaaagaaagaagctaaagggaaatggact
tctctaaccagttctattggaaaacatgatgatagattggaggagcttcgggctatgatt
gatccatttgttcatgttcataaggggaacattcttaaagaaaaccttccgggattgagg
gattgtgtcattgtgttgcatccacctcctttgcaaaagagacttcttcaggccattcaa
gggatccagaatccgcttgaattagagtatatggtatctttgctttctgttcatccttct
ttgttaataagcatgaagggttcgttccctagaaaagaagaatgcaacattgaagaatca
attaatgaagacatgctagaaaggatcaagttggaccccaatgaaggagtaaaaataagg
tttctcatggaactcattcggcttagtgaagcaatgaatgagaaggttttggtattcagt
caatttattgaacctttttcttttataaaggaacaacttagatctttctttggctggact
gaaggaaaggaggtcttgcaaatggatgggaaacttgatgtaaagattcgacagtcctca
atcaatcttttcaatgatccaactagtgaggttagaatattacttgcatcaatgaaagct
tgttctgagggaataaatttggttggagcttcacgggttgttctacttgatgttgtttgg
aatccatcagtagaaagacaagctataagccgagcttatagattggggcaaaaaaaggtt
gtgtatacttaccatcttattacatctggaacgaaggagggagagaaatattgcagacag
gctgaaaaggaccggttgtcagagttggttttctcatctaggcacatggatggtgataaa
ctaaacgcttcaccaacagtcttgaaagatgagatggaagataaaatcttggaagagatg
gttcggcacaacaaactaaagggcatgtttgaaaagatcatatatcaaccaaaagattca
aatttatttggagacttttggctcaacaactctcagacaagcacctaa
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