Nelumbo nucifera (sacred lotus): 104609870
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Entry
104609870 CDS
T04131
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03013
Nucleocytoplasmic transport
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104609870
03015 mRNA surveillance pathway
104609870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104609870
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104609870
5.6.2.5 RNA 5'-3' helicase
104609870
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104609870
mRNA cycle factors
Common to processing body (P body) and stress granule
104609870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
104609870
NCBI-ProteinID:
XP_010274587
UniProt:
A0A1U8BE07
LinkDB
All DBs
Position
Un
AA seq
1259 aa
AA seq
DB search
MAAQTVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWPPTPDSV
SDSADRGVDLQADGGAVSSAPGSVLKGRGGSSSGSGSNQATVDAIASGMSGLSFEETGED
ENYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHK
EVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDL
SQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVD
DEPQPVALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFV
FPKEDNELRLVPGDELRLRYSGDATHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNH
GFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFGAPG
LPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV
DQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQG
ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPE
CLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRMH
PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL
NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS
VDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLW
NSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGNGPGVVPNDNFGSIGSS
SSNSDKRGNRSKGSYMPFGAPNGTQKPGVHPAGFPVPRIPLPPFPGGPHSQPYAIPTRGA
VHGPIGAVPQVPQAGSRGFGAGRGNAGGPIGGHLSHQQGSQQSIGGLGSTFNFPSLDNPN
SQPSVGGPLSQSGLMTQVPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYNTANFS
TQASQSGYGVDYVTQGTQGGFPGSFLNQNSQAGYSHLGTGNDFISQGLFTQVGFNDPSQD
DTSQAHFSVGAPNPLQSQDMMNPLYSQSFTQYNTQPLSLQVPQQQQGQGSQNQKLHYNG
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcagacggttgtaaacaatctttacgagacggcatcacagcctgatacaggc
ggagacgcctataccttcctggaattcaatacgcagggtgacgactatgactatccggaa
ttccgagaattatcacagccgatcaggtcgtccgtgtggcctccaacgccggattctgtg
tcagattctgctgaccgtggtgtcgaccttcaagccgatggtggcgctgtttcttctgct
cctggaagtgtgttgaagggtagaggcggaagcagtagcggcagcggcagcaatcaggct
acggtggatgccatagcgtcaggaatgagtggtctgagcttcgaagagaccggtgaggat
gagaattacgagtatgggaagggtgattttacggagcatgcctgtcggtattgtggggtc
caaaatccggcttgtgttgttaggtgcaacgtgccgtcatgccggaagtggttctgtaat
tcgcgggggaacacttcaggttctcatatcgtcaatcatctggttagagcaaaacacaag
gaagtttgtcttcataaagacagtcctctgggagaaacaattcttgaatgctacaactgt
ggttgcagaaatgtgtttcttcttggatttatttctgcgaagacagagagtgttgttgtt
cttctttgtagagaaccttgtttgagtgtcaatgcattgaaggatatgaactgggacttg
agccagtggtgtcctcttattgatgataggtgtttcttgcagtggcttgtgaagatccca
tctgaacaggagcaattgagagcacgccaaattagtgctcaacagataaataaggtggaa
gagctttggaaaactaaccctgatgccactcttgaagatcttgagaaacctggagtggat
gacgaacctcaacctgtagccttgaaatatgaagatgcatatcagtatcaaaatgtattt
gcaccgcttgtcaaacttgaagctgattatgataaaatgatgaaggaatcacagagtaaa
gacaatgtaaccatacggtgggatattggtctcaacaagaaacgcattgcatactttgtc
ttcccaaaggaagataatgaattgcggctggtacctggtgatgagttgcggcttcgttat
tcaggtgatgcaactcatccagcatggcagtctgtggggcatgtgatcaagttgactgca
caagaagaggttgctcttgagctccgtgccagccagggtgtacctgttgatgtgaaccat
ggtttcagcgttgattttgtttggaaaagtacaagttttgatcggatgcagggtgcaatg
aaaacttttgcagtggatgaaacaagtgttagtgggtacatatatcatcacttgctaggt
catgaagttgaggctcaggtggttcgtaatacactacctcgtcgttttggtgcaccaggc
cttccagaacttaatgcatctcaggtttttgctgtaaagagtgtactacagaaaccaatt
agtttaatacaagggcctcctggcacaggaaaaactgttacttccgcagctattgtatac
cacatggctaaacaaggacaagggcaggtgttggtttgcgctccaagtaatgttgctgta
gatcaacttgctgaaaagatcagtgcaactgggttgaaggttgtcaggctttgtgctaaa
tcgagggaagctgtaagctctcctgttgagcatttaactttgcactatcaggtccaacat
cttgatacatctgaaaagagcgaacttcataagctgcagcaactcaaggatgaacaaggg
gagctatctagcagtgatgagaagaagtacaaagccttgaaaagggcaactgagagggaa
atatcccagagtgctgatgtcatctgttgtacatgtgttggagctggggatcctcgatta
gcaaattttagattccgccaggttcttattgatgagtctacccaggcaacagagcccgaa
tgtctcattcctttagtgcttggagtgaaacaggttgttcttgttggagaccattgtcaa
cttggtccagtcatcatgtgcaagaaggcagctcgtgcaggattagctcaatccctcttt
gagcgtcttgtgcttcttggtgtgaaaccatttagattgcaggtgcaataccgtatgcat
ccatccctttcagagtttccttctaacagcttctatgaaggtacacttcaaaatggagtg
accatcaatgaaaggcaatcgtcagggattgattttccttggcctgtgccaaatcgtccc
atgttcttttatgttcagatgggacaagaggagataagtgcaagtggaacttcatactta
aataggactgaggctgcaaatgttgaaaaaattgttactactttcttgaggagtggtgtt
gttcctagccagattggagttataacaccatatgaagggcagcgagcctatatagtgaac
tatatgtcaaggaatggtgctctcagacagcagctttacaaggaaattgaggttgctagt
gtggattcctttcagggaagagagaaagattatattattttgtcctgtgttaggagtaat
gagcatcagggcataggattccttaatgatccgcgcaggctcaatgttgctcttacacga
gctcgctatggtattgttatcttgggaaatcctaaagtcttgagcaaacagccattgtgg
aatagtttattgacccactacaaggaacatgagtgcctggtggaaggacctttaaataat
ttgaagcagagtatggtccagtttcaaaagccaaaaaagatctacaacgaccgcagactt
ttctttggtaatggcccaggggttgtgccaaatgataactttgggtccattggttcatct
agctcaaattctgataaaagaggcaaccgctctaaaggttcttatatgccatttggtgca
cccaatggaacccaaaagcctggtgtccatccagctggatttcctgttccccgaattcct
cttccaccatttcctggtggtccacattcacagccttatgcaattccaactcgtggggct
gttcatggaccaattggagctgttccacaggtccctcaagcaggtagcaggggttttggg
gctgggcgtggtaatgcgggtggtcctattggtggtcacctctcacatcagcaaggttcc
caacaaagcatcggtggtctggggtctactttcaattttccttctctggacaatccgaat
agccagccttcagttggtggtccattatctcaatctggacttatgacccaggtgccggtt
caaggactaagccagacattccgtgacgggttttctattggaggcatgtcacaggatttc
ttgggtgatgacttcaaaagccagggatcacatgtcgcatacaacaccgcaaacttctcc
acccaggcttctcaaagtggatatggtgttgattatgttacacaaggaacacaaggtggt
ttcccaggaagctttctaaaccagaattcacaggctggatactctcatttgggtactgga
aatgatttcatatctcagggtctatttacccaggttgggttcaatgacccttcacaagat
gatacctctcaggcacactttagtgtgggtgctcctaacccacttcaatcccaggacatg
atgaatcctctttactctcagtcttttacccagtacaacacacagccactaagcctgcag
gtgccacagcagcagcagggtcagggctcacagaatcagaagctccattacaatggctga
DBGET
integrated database retrieval system
