Nelumbo nucifera (sacred lotus): 104610841
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Entry
104610841 CDS
T04131
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104610841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104610841
03041 Spliceosome [BR:
nnu03041
]
104610841
03009 Ribosome biogenesis [BR:
nnu03009
]
104610841
03016 Transfer RNA biogenesis [BR:
nnu03016
]
104610841
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104610841
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104610841
Spliceosome [BR:
nnu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104610841
Complex C
U4/U6.U5 tri-SnRNP related factors
104610841
Ribosome biogenesis [BR:
nnu03009
]
Eukaryotic type
Pre-60S particles
Helicases
104610841
Transfer RNA biogenesis [BR:
nnu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104610841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
104610841
NCBI-ProteinID:
XP_010275959
UniProt:
A0A1U8B4W3
LinkDB
All DBs
Position
Un
AA seq
991 aa
AA seq
DB search
MGPLKRKSFDSPSEESGQPQKQQRENDLVRLDETVACVHDVSYPEGYVHSSKSSTREHSK
PAKEFPFKLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRDNQRVIYTSPI
KALSNQKFREFKEEFSDVGLMTGDITIEPNASCLVMTTEIWRSMQYKGSEIMREVAWVIF
DEVHYMRDRERGVVWEESIVMAPKNSCFVFLSATVPNAKEFADWVAKVHRQPCHIVYTDY
RPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALLPAGEGNKKRENGKWQKGLMV
GKAGEESDIFKMVKMIIQRQYDPVILFSFSKRDCELLAMQMAKMDLNEDDEKVNIETIFW
SAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF
SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDETLEP
STAKTMLKGSADCLNSAFHLSYNMLLNQIRCEDGDPENLLRNSFYQFQSDRAIPNLEKEA
KNLEEERDSIIIEEEESLKNYYTLLQQYKSLKKDVCDIVFSPRYCLPFLQPGRLVRLRCN
ENDDSTPSFSLEDQATWGVIINFEKVKDVSEDDESRKPEDANYTVNVLTRCIFNKDGITK
KSLRVIPLKKSGEPAVVSIPITQIDSLSSIRLIIAKDLLPLQARENTIKKILEVLSRFSK
EGMPLLDPEEDMKVQSNSYKKAMRRIEALESLFVKHEVAKSPLIEEKLKVLQKKQDLTAK
IKSIRRTMRSSTALAFKDELKARKRVLRRLGYVASDDVVELKGKVACEITSAEELTLTEL
MFNGVLKDITIEEMVSLLSCFVWQEKLQDAHKPREELGLLFTQLQETARQVAKVQLECKV
QIDVEAFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAA
KSIGETQLESKFEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggggcctttgaagaggaaatcattcgacagtccctcagaagagtctggccaaccgcag
aaacagcagagagagaacgatttggttcgtctagatgagacggtagcctgtgttcatgac
gtttcctaccccgaaggttacgttcattcgtcaaaatcttcaactcgagaacattcgaag
cctgcgaaggaatttcctttcaagcttgacccttttcagtcggaggcaatcaaatgcctt
gataatggtgaatccgttatggtatctgcccatacatcagctggaaaaacggtagtagct
ctgtatgctattgcaatgtccttacgagacaaccagcgggtcatctacacttcaccaatc
aaagcattgagcaaccaaaaatttagagaatttaaagaagagttttcagatgttggtttg
atgactggagacataaccattgagccaaatgcttcatgtttggtcatgaccacggaaatt
tggcgtagtatgcaatataaaggatcagagattatgcgggaggtggcctgggttattttt
gatgaggtacattacatgcgtgacagggaaagaggtgtagtttgggaagagagtattgtc
atggctccaaagaactcatgttttgtattcctgtcggcaacagttcctaatgctaaggag
tttgctgattgggtagcaaaggtacaccgacaaccatgccatattgtttatacagattat
cggcctacaccacttcagcattatattttcccttctggaggcgatggcctatacttggtg
gtggatgaaaagggtaaatttcgtgaggacagtttccagaaagccctaaatgctcttctt
cctgctggagaaggaaacaagaaaagagagaatgggaagtggcagaaggggttaatggtg
ggtaaagcaggagaagagagtgacattttcaagatggtgaaaatgataattcagcgtcag
tatgatcctgttatacttttcagctttagcaaaagggattgtgagcttttggcaatgcag
atggcaaaaatggatcttaatgaggatgatgaaaaagttaatatagaaactatattttgg
agtgccatggacatgctttcagatgatgataagaagcttccccaggtttcaaacatgttg
cccttgttgaagcgtggaataggtgttcaccattctgggttgcttccaattttaaaagaa
gtgattgaaatactgtttcaagaaggtctgatcaagtgtttatttgccacagagaccttc
agcataggtttgaacatgcctgcaaaaactgttgtgtttacaaatgttcgtaagtttgat
ggtgataagttcagatggatttctagtggagagtatatacagatgagtggtcgtgctggt
cgccgtggtattgatgaacgagggatatgcatcctcatggttgatgagacgctggagcca
tccacagctaaaacgatgctgaagggaagtgctgattgtctgaacagtgctttccatcta
agctacaacatgcttttgaatcaaattcgatgtgaagatggtgatccagagaacctactc
aggaattcattctatcagtttcaatctgaccgtgcaattcccaatcttgagaaagaagca
aagaaccttgaagaggagagagattcaataataattgaagaagaagagagtttgaagaat
tactatactctcttacaacagtacaaaagtttgaagaaggatgtttgtgatattgtgttc
tccccaaggtactgcttacccttcttgcagcctggcaggcttgtacgtctccgatgcaat
gaaaatgatgacagtactccttctttttccctggaggatcaggctacatggggggtaata
atcaattttgaaaaggtgaaagatgtttctgaagatgatgaaagtagaaaaccagaggat
gcaaactacacagtaaatgttcttactaggtgtattttcaacaaggatgggattacgaaa
aagtctcttagagttatcccgttaaagaaatctggagagcctgctgttgtttccatccct
attacacagattgatagtttgagtagtattcgccttatcatagcaaaggatcttttgcca
ttgcaagctcgagagaatactataaagaagattttagaagtgctttcccgattttctaaa
gaagggatgcctctcctggaccctgaagaggacatgaaggttcaaagtaactcgtacaaa
aaggctatgcgtcggatagaggctttggagagcttgtttgtcaaacatgaagttgctaag
tctccacttattgaggaaaagctcaaagtcttacaaaaaaagcaagatttaacagccaag
ataaagtcaataaggagaacaatgcgttcttccacagcattggcttttaaggatgaattg
aaggcacggaagcgggttttacggaggctaggatatgttgcaagtgatgatgttgtggag
ttgaagggaaaagttgcttgtgagatcactagtgcagaagagttgacactgacagagctc
atgttcaatggggtgttaaaggacattaccattgaagaaatggtgtcacttctctcatgc
tttgtgtggcaggagaagcttcaggatgcccacaagcccagagaagagcttggcttgctc
tttactcaattacaagagaccgcaaggcaggttgcaaaagttcagcttgagtgtaaggtc
caaattgatgtggaggcttttgtaaattctttccgacctgacatcatggaggctgtgtat
gcatgggcaaaaggatccaaattctatgagataatggaaattacacaggtctttgagggc
agtcttatcagggctatcaggagattggaggaagttctccagcagcttatactggcagca
aaatcaataggagaaacccagttagaatcaaaatttgaggaagctgtttccaagatcaag
agagacattgtcttcgctgcttctctatatttgtag
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