Nelumbo nucifera (sacred lotus): 104610875
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Entry
104610875 CDS
T04131
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104610875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nnu03021
]
104610875
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104610875
Transcription machinery [BR:
nnu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104610875
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104610875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104610875
NCBI-ProteinID:
XP_010275998
UniProt:
A0A1U8BHA9
LinkDB
All DBs
Position
Un
AA seq
1071 aa
AA seq
DB search
MEEERFVSARESPRNLGFLSERGSSTSGGSINSSKAVPNDLAQKPPPPILEKFRALLKER
EEEMRVSDDDDVPPPSTEEIVRLYEVVLSELTFNSKPIITELTIIAGEQREHGEGIADAI
CARIIEVPVEQKLPSLYLLDSIVKNIGREYARYFASRLPEVFCEAYRQVQPNLYPAMRHL
FGTWSTVFPTKVLRKIEVELQFSPASNQQSTSLTAPRSSEESPPPRPSHGIHVNPKYLER
RQIEHSSFANDIQQGRGSSSSLQIYGRKPASGYVEFDLDHDEGISPHFGVQGLDSQGAAI
RASSVGAAERLLPTKARLARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSE
YGPGKATDGDGEKSEWWFKCQQMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKP
LKVERLDINGINSKEVSKRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRT
GLERPSTAILESDFRRGNWPNQVQLSTMDDAAFISGDGVSILGSGHVTMGNNSLRCPQTQ
NESSHVQSSHHSQEPQNFPHQFPQSSQEHLDLKARGRAVQMSFPAAGVVPSAIKKMPSQV
DNFLDTDAQFQRFSGVVSRMGSSNRDTMNVEALSTMMPPASALQKHRGQRPSLAPLVWPP
VNVPKSHPPPPLSVLPQQNQIKSQSNIMDISRIPNKSLTLPGQHLGVIERNTLTPTKLLQ
FPNQQAGLISLNQRSQGQASHLPAQPLMSQNAQENFVPSAVAQMSTHKMEQPLNHGHIPQ
GHLSVTSSILPNPIPGLASSSVTIHGLSNTPFHLPGRALPPLPPGPPPVSSQIEPISQNV
GPIATHASSGSAFSGLISSLMAQGLISLTTPASVQDSIGVEFNLDLLKVRHESAIKALYA
DLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRISKSRKQKPSRKWFVSTNVWLSGAEALGV
DAVPGFLPTEAVAEKDDQEMAVPADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAP
DGPPADMDRSQLGPIVHAKCRSESTVVPPEDFQLDEGGTTEEGNQRKRMRS
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagaggttcgtctctgccagagaaagccctcggaatttagggtttctgtca
gagcgtggctccagcaccagtggcggcagcatcaacagcagcaaggccgtgcccaatgac
ctcgctcaaaagcctccacctccaattctcgaaaaatttagggctctgttgaaggagaga
gaagaggagatgagggtctcggatgacgacgacgttccgcctccgagcaccgaagagatt
gttcgactttatgaagttgttctatcggagctcactttcaattcgaagcctattatcaca
gagcttacgattatagccggtgagcaaagggagcacggcgagggaattgctgatgcaatt
tgtgcccgtattattgaggttccagttgagcaaaagctgccatctttatatcttctggac
agtattgtgaagaatattggccgtgaatatgcgaggtattttgcttcccgcctccctgag
gtattctgtgaagcatacaggcaagttcaaccaaacctatatccagcaatgcgccacctc
tttgggacatggtcaacagtatttccaactaaagtgcttcgaaagattgaggtcgaactg
cagttttctccagcttcaaaccaacaatcaactagcttgacagctccaagatcatctgaa
gaatctccacctcctcgaccaagtcatggtatacatgtcaatccaaaatacttggaaaga
cgtcaaattgaacattcatcatttgcaaatgacattcaacaaggaagagggagttcttca
agcctacagatctatgggagaaaacctgcaagtggatatgttgaatttgatttggatcat
gatgagggtatttctcctcattttggagtgcaggggttagattcacaaggagctgcaatc
cgtgcatcctctgttggtgctgctgagaggctgcttcctacaaaagctagacttgcaagg
tcttcttctcctgcgagaattggagctaggtccttaccaccaacaaatgatggatttgct
attaataattctccaagaagagttgttgaaggggcctcaccatcacattccggttctgaa
tatggacctggaaaagctaccgatggggatggggagaagagtgaatggtggtttaagtgt
cagcagatggaaacttctggtacatacaatcccagtaatggatgtgaccagcaaaggcca
agagcgttgattgatgcttatggaaattacagagggaaaaacacacttaatgggaagcct
ttgaaggttgaacggcttgatattaatggcataaacagtaaggaggtttcaaaaagatgg
cagaataccgaagaagaggagtatgtttgggaagatatgagcccaacactgacagaccgt
agtaggggtaacgatctcatgccatttaatcctcctcttggcagcttaagcagaagaact
ggtttggagagacctagtactgcaatattggaatctgatttcaggagaggcaattggcct
aatcaggttcaactctctacgatggatgatgcagcatttatttctggagatggggtttcc
atcctgggttctggccatgtaactatgggcaacaactctcttcgttgtccacaaactcaa
aatgagtcaagtcatgttcagagttctcatcattctcaggaaccacagaattttccacac
caattccctcagtcttcacaagaacatcttgacctgaaagcaaggggaagagctgttcag
atgtcatttccagcagctggagtagttccatcagctatcaagaaaatgccttctcaggtt
gataattttctagatactgatgcacaatttcagaggttctcaggtgttgtgtccagaatg
ggatcttcaaatcgtgatactatgaatgtggaggctctttctaccatgatgccaccagca
tcagcattgcagaagcatcggggacaaagaccttccttggctccattggtctggcctcct
gtaaatgtacctaaatctcatccaccccctcctctctcggttcttcctcaacaaaaccag
attaagagtcagtccaatataatggacattagcaggatcccaaataagtctttgactttg
cctgggcagcatttaggtgttattgagaggaacactttaactcctactaagctgcttcag
tttcctaatcaacaggctggattgatttccttgaatcagcgaagccagggacaggcttct
catttacccgcacaaccacttatgtctcaaaatgctcaagaaaattttgttccatctgct
gttgctcagatgtcaactcacaaaatggaacaacccttgaatcatggacatatcccacaa
gggcatttatctgttacaagttcaattttacctaatccaatacctgggctagcatcatcg
tctgttacaattcatggtttatcaaatacccccttccatttgccagggcgggccttgcct
cctctacctccaggcccccctcctgtctcgtcgcagatagaacctatatctcaaaatgtg
ggccctattgcaactcatgcatctagtgggagtgcattttcaggtctaattagttctctc
atggctcaaggtttgatctcattgacaacacctgcttcagttcaggactccataggagtt
gagttcaatctggatctccttaaggtgcggcatgagtctgcaataaaggctctgtatgct
gatcttccaagacagtgcactacttgtggcttacgcttcaagtgccaagaggaacatagt
agtcacatggattggcatgttaccaagaatcggatatccaaaagccgcaagcagaagcca
tctcgcaagtggtttgtgagtactaatgtgtggctcagtggtgcagaagcattgggagtt
gatgcagttcctgggtttttgcccactgaagctgttgctgagaaggatgatcaagaaatg
gctgttcctgctgatgagaatcagaatgtatgtgcattatgtggagagccctttgatgat
ttttacagtgatgagacagaggaatggatgtataaaggggctgtatacttaaatgcacct
gatggtccaccagcagacatggacagatcccaactaggtccaattgtgcatgcaaagtgt
agatctgagtccacagtagttcctccagaagattttcagctagatgaaggggggactact
gaagaaggtaatcaaaggaaaaggatgcggagttag
DBGET
integrated database retrieval system
