Nelumbo nucifera (sacred lotus): 104612095
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Entry
104612095 CDS
T04131
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nnu03041
]
104612095
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104612095
Spliceosome [BR:
nnu03041
]
Complex C
Other components
Complex C specific factors
104612095
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_19
AAA_30
ResIII
AAA_7
HA2_N
AAA_11
Cas3-like_C_2
nSTAND3
T2SSE
RVP_2
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
104612095
NCBI-ProteinID:
XP_010277712
UniProt:
A0A1U8B971
LinkDB
All DBs
Position
Un
AA seq
696 aa
AA seq
DB search
MSQFWKPGSERPRLIDDEEGGVIFYSSSPSTSSGFGYATIEKQRQRLPVYKYRTAILYLV
ETHATTIIVGETGSGKTTQIPQYLNEAGWAEGGRIIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTNPDTTKVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRLIISSATIEAKSMSSFFQTSSKKRKGQTGEDLEPRTDPAILSVE
GRGFNVQIHYLEEPVSDYLQAAVSTVLSIHDQEPMGDILVFLTGQDDIDAAVQLLTEEVH
NNRKHSGLIILPLYSGLPRAEQDLVFSPTPRGQRKIIISTNIAETSLTLEGIVYVVDSGF
SKQRFYNPISNIENLVVAPISQASARQRAGRAGRVRPGKCYRLYTEEYFVKEMSTQGIPE
MQRTNLVSCVIQLKALGIDNILGFDWLASPSPEAVIRALEVLYSLRILDDDAKLTSPTGF
QVAEISLDPMISKMILSANLLGCSEEIITISAILSIQSIWVSVRGSQKELDEAKLRFAVA
EGDHVTYLNVYKGFLESGKSSQWCYKNFINYHAMKKVIEIREQLRRIAQRIGIALKSCEG
NTEVLRKAITAGFFANACHLETFSKGGMYKTVRGSQEVYIHPSSVLFRVNPKWVIFHSLV
STDRQYMRNVTAIDPSWLIEAAPHFYEHQRGNPVAY
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagttctggaagcctggttcggagagacctcgacttattgatgacgaagaaggc
ggggtcattttctactcctcgtctccatccacctcctctggtttcggatatgccaccatc
gagaagcagcgacagaggcttccagtttacaagtaccgtactgcaattctctatcttgtt
gagactcatgcgaccactatcattgtgggggagacgggtagcggtaaaactactcagata
cctcagtatctcaatgaagcaggctgggctgagggtggacgtataatagcttgcacccaa
ccragaagattggctgtccaggcagttgcctcaagagtagcagaggagatgggtgtcaaa
cttggcgaagaggttgggtacacaattcgtttcgaagatcttacaaatccagacacaacc
aaggtcaaatttcttacagatggagtactccttagggaaatgatggatgaccctcttttg
accaaatacagtgtcataatggtagatgaggctcatgaaaggtcactttcaactgatatc
ctattgggcctgttgaaaaagatccaacgacgtagacctgagttgcgtctgataatatca
tctgctacaattgaagccaagtcaatgtcttcttttttccagaccagcagcaagaaacgt
aaagggcaaactggagaagatttggagccaagaaccgaccctgccattctatcagtagaa
ggtagagggtttaatgtacaaattcattatcttgaggaacctgtctccgattatcttcaa
gctgctgtttcaactgtgttgtcaattcatgatcaggaacccatgggcgatattctggta
ttccttacaggtcaagaygatattgatgctgctgttcaattactaacagaagaagttcat
aataacagaaagcactcagggttaattattttgcctctgtattcgggccttccacgtgca
gaacaggaccttgtgttttctccaacccctagaggacagaggaagattattatatcaact
aatattgcagagacatcattgaccttggagggcattgtttacgttgtggatagtgggttt
tcaaaacagcgcttctataatccgatttcaaacattgaaaacctggtagtggcaccaata
tcccaggcatctgctagacaaagagctggtagagctggaagggtacggccaggaaagtgt
taccggttatatacagaagagtactttgtcaaggaaatgtctactcaggggatcccagag
atgcagagaacaaaccttgtttcttgtgttattcaattgaaagctttgggtatagataat
atcttaggctttgattggcttgcatctccatcgccagaggcagtgattagagctcttgaa
gttctttattcactgagaattcttgatgatgatgctaaacttacttcacccactggattt
caagttgcagagatttcattggatccaatgatctcaaaaatgatcttatcggcaaaccta
cttgggtgttctgaggaaattatcaccatatctgcaattctatctattcagtccatctgg
gtttctgttagaggatcacagaaggagttggatgaagcgaagctgcgatttgctgttgct
gagggtgaccatgtgacttacctgaatgtatacaaaggattcctcgagtctggtaaatct
tcccaatggtgttacaagaatttcataaattaccatgcaatgaaaaaggttattgagatt
agagaacaactcaggaggatagctcaaaggataggtatagccttaaaatcttgtgaaggg
aacaccgaggtactgaggaaggcaattactgctggattttttgctaatgcatgccatttg
gaaaccttcagtaagggtgggatgtacaagactgttcgaggttctcaagaagtttacatc
catccatcatctgttctcttcagagttaatccaaagtgggttatcttccattctcttgtt
tcaactgatcgacaatacatgcgcaatgtcactgctattgatccttcttggctgatagag
gcagctcctcacttttatgagcaccaaagaggcaatcctgttgcatactga
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